Hb_024948_010

Information

Type -
Description -
Location Contig24948: 21759-22959
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05780g
description hypothetical protein
nr
ID XP_011039449.1
description PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
swissprot
ID P52408
description Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1
trembl
ID A0SVL9
description Beta-1,3-glucanase (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta- basic isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25924: 21664-23020
cDNA
(Sanger)
(ID:Location)		 007_H05.ab1: 22033-23012 , 025_J19.ab1: 22033-23012 , 046_J15.ab1: 22054-23012

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024948_010 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
2 Hb_010053_010 0.125839668 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
3 Hb_000431_140 0.1274904019 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
4 Hb_000128_050 0.1481777289 - - conserved hypothetical protein [Ricinus communis]
5 Hb_164300_010 0.1502647291 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
6 Hb_000832_250 0.1537152112 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
7 Hb_000552_030 0.1555547209 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
8 Hb_000755_090 0.1600127044 - - transferase, putative [Ricinus communis]
9 Hb_002217_060 0.1630046735 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
10 Hb_005357_180 0.1682502883 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
11 Hb_068804_070 0.1840636584 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
12 Hb_002081_220 0.1841412077 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
13 Hb_002081_190 0.1894515137 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
14 Hb_173764_010 0.1919560878 - - protein binding protein, putative [Ricinus communis]
15 Hb_004519_010 0.1930422919 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
16 Hb_000101_370 0.1934498647 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
17 Hb_001019_210 0.1948010083 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
18 Hb_003592_060 0.1996744478 - - hypothetical protein F383_11017 [Gossypium arboreum]
19 Hb_003119_120 0.2017189669 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
20 Hb_001226_100 0.2027129227 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_024948_010 Hb_024948_010 Hb_010053_010 Hb_010053_010 Hb_024948_010--Hb_010053_010 Hb_000431_140 Hb_000431_140 Hb_024948_010--Hb_000431_140 Hb_000128_050 Hb_000128_050 Hb_024948_010--Hb_000128_050 Hb_164300_010 Hb_164300_010 Hb_024948_010--Hb_164300_010 Hb_000832_250 Hb_000832_250 Hb_024948_010--Hb_000832_250 Hb_000552_030 Hb_000552_030 Hb_024948_010--Hb_000552_030 Hb_010053_010--Hb_000128_050 Hb_002081_220 Hb_002081_220 Hb_010053_010--Hb_002081_220 Hb_010053_010--Hb_000552_030 Hb_010053_010--Hb_164300_010 Hb_002081_190 Hb_002081_190 Hb_010053_010--Hb_002081_190 Hb_027028_010 Hb_027028_010 Hb_000431_140--Hb_027028_010 Hb_003119_120 Hb_003119_120 Hb_000431_140--Hb_003119_120 Hb_000431_140--Hb_164300_010 Hb_000431_140--Hb_000552_030 Hb_000431_140--Hb_010053_010 Hb_000128_050--Hb_002081_190 Hb_173764_010 Hb_173764_010 Hb_000128_050--Hb_173764_010 Hb_000128_050--Hb_000552_030 Hb_000343_220 Hb_000343_220 Hb_000128_050--Hb_000343_220 Hb_001366_380 Hb_001366_380 Hb_000128_050--Hb_001366_380 Hb_000101_370 Hb_000101_370 Hb_164300_010--Hb_000101_370 Hb_164300_010--Hb_002081_220 Hb_000705_090 Hb_000705_090 Hb_164300_010--Hb_000705_090 Hb_000215_420 Hb_000215_420 Hb_164300_010--Hb_000215_420 Hb_004519_010 Hb_004519_010 Hb_000832_250--Hb_004519_010 Hb_001019_210 Hb_001019_210 Hb_000832_250--Hb_001019_210 Hb_079394_010 Hb_079394_010 Hb_000832_250--Hb_079394_010 Hb_000832_250--Hb_000215_420 Hb_000832_250--Hb_000101_370 Hb_000552_030--Hb_173764_010 Hb_000552_030--Hb_002081_190 Hb_003549_010 Hb_003549_010 Hb_000552_030--Hb_003549_010 Hb_000552_030--Hb_027028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.589031 91.1559 17.4196 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145158 0.0761137 0 69.2374 14.4408

CAGE analysis