Hb_024952_010

Information

Type -
Description -
Location Contig24952: 1875-5403
Sequence    

Annotation

kegg
ID tcc:TCM_006534
description Rho guanyl-nucleotide exchange factor 1
nr
ID XP_012084870.1
description PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
swissprot
ID Q93ZY2
description Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2
trembl
ID A0A067JT44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20943 PE=4 SV=1
Gene Ontology
ID GO:0016324
description rop guanine nucleotide exchange factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25942: 4081-5735
cDNA
(Sanger)
(ID:Location)		 001_K18.ab1: 4348-5735

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024952_010 0.0 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
2 Hb_001396_230 0.0981572411 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
3 Hb_001606_070 0.1028542784 - - fimbrin, putative [Ricinus communis]
4 Hb_005779_100 0.1046289813 - - DNAJ [Theobroma cacao]
5 Hb_001153_220 0.1073502474 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
6 Hb_002352_010 0.1099884962 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
7 Hb_000861_040 0.1138907168 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
8 Hb_001473_130 0.1145207143 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
9 Hb_000260_060 0.1148444869 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
10 Hb_000249_130 0.1168218695 - - hypothetical protein RCOM_0254640 [Ricinus communis]
11 Hb_001677_110 0.1194701702 - - Protein YIPF1, putative [Ricinus communis]
12 Hb_000427_110 0.1196886757 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
13 Hb_143629_090 0.1197008238 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
14 Hb_002290_040 0.1223549631 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002527_070 0.1245011971 - - axonemal dynein light chain, putative [Ricinus communis]
16 Hb_004800_160 0.12596868 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
17 Hb_010589_040 0.1263395971 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002154_050 0.1269214442 - - RNA binding protein, putative [Ricinus communis]
19 Hb_000983_100 0.1272525673 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
20 Hb_000157_010 0.1276244694 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_024952_010 Hb_024952_010 Hb_001396_230 Hb_001396_230 Hb_024952_010--Hb_001396_230 Hb_001606_070 Hb_001606_070 Hb_024952_010--Hb_001606_070 Hb_005779_100 Hb_005779_100 Hb_024952_010--Hb_005779_100 Hb_001153_220 Hb_001153_220 Hb_024952_010--Hb_001153_220 Hb_002352_010 Hb_002352_010 Hb_024952_010--Hb_002352_010 Hb_000861_040 Hb_000861_040 Hb_024952_010--Hb_000861_040 Hb_001396_230--Hb_005779_100 Hb_008085_040 Hb_008085_040 Hb_001396_230--Hb_008085_040 Hb_002739_110 Hb_002739_110 Hb_001396_230--Hb_002739_110 Hb_001396_230--Hb_001606_070 Hb_003030_080 Hb_003030_080 Hb_001396_230--Hb_003030_080 Hb_000849_040 Hb_000849_040 Hb_001606_070--Hb_000849_040 Hb_001606_070--Hb_005779_100 Hb_001606_070--Hb_003030_080 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_006787_040 Hb_006787_040 Hb_001606_070--Hb_006787_040 Hb_001606_070--Hb_000861_040 Hb_002154_050 Hb_002154_050 Hb_005779_100--Hb_002154_050 Hb_006602_020 Hb_006602_020 Hb_005779_100--Hb_006602_020 Hb_006602_010 Hb_006602_010 Hb_005779_100--Hb_006602_010 Hb_002357_040 Hb_002357_040 Hb_005779_100--Hb_002357_040 Hb_001473_130 Hb_001473_130 Hb_005779_100--Hb_001473_130 Hb_025214_130 Hb_025214_130 Hb_001153_220--Hb_025214_130 Hb_064997_010 Hb_064997_010 Hb_001153_220--Hb_064997_010 Hb_001959_160 Hb_001959_160 Hb_001153_220--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_001153_220--Hb_002290_040 Hb_023292_010 Hb_023292_010 Hb_001153_220--Hb_023292_010 Hb_002352_010--Hb_001473_130 Hb_002527_070 Hb_002527_070 Hb_002352_010--Hb_002527_070 Hb_002352_010--Hb_000427_110 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002326_030 Hb_002326_030 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_000861_040--Hb_002326_030 Hb_000861_040--Hb_002527_070 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.0086 7.84537 8.66025 15.1481 45.1911 85.3398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.4971 63.8459 184.586 18.5199 4.18729

CAGE analysis