Hb_024958_010

Information

Type -
Description -
Location Contig24958: 14843-20229
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28740g
description POPTRDRAFT_641513; hypothetical protein
nr
ID XP_012078954.1
description PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
swissprot
ID P0C895
description LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1
trembl
ID A0A067LLY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17382 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr repeats and ubiquitin-like domain-containing protein at2g30105

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25943: 15030-20190
cDNA
(Sanger)
(ID:Location)		 034_B06.ab1: 15030-18676

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024958_010 0.0 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
2 Hb_002936_010 0.0432765204 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
3 Hb_001359_050 0.048644547 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000684_380 0.0549931626 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
5 Hb_002320_040 0.0624241605 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
6 Hb_008725_230 0.0638530921 - - PREDICTED: CTP synthase [Jatropha curcas]
7 Hb_006570_080 0.0675098094 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
8 Hb_001408_040 0.0693450471 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
9 Hb_001221_110 0.0701492387 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
10 Hb_002205_110 0.0703942206 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006831_140 0.0734878077 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_002232_410 0.0757863438 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
13 Hb_093458_040 0.0765388002 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
14 Hb_000331_550 0.0766358609 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
15 Hb_001278_100 0.0768864214 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
16 Hb_001599_040 0.0774012684 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
17 Hb_000270_310 0.0774030955 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
18 Hb_000028_370 0.0775155595 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
19 Hb_164010_040 0.0778685597 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_001133_120 0.0779275339 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]

Gene co-expression network

sample Hb_024958_010 Hb_024958_010 Hb_002936_010 Hb_002936_010 Hb_024958_010--Hb_002936_010 Hb_001359_050 Hb_001359_050 Hb_024958_010--Hb_001359_050 Hb_000684_380 Hb_000684_380 Hb_024958_010--Hb_000684_380 Hb_002320_040 Hb_002320_040 Hb_024958_010--Hb_002320_040 Hb_008725_230 Hb_008725_230 Hb_024958_010--Hb_008725_230 Hb_006570_080 Hb_006570_080 Hb_024958_010--Hb_006570_080 Hb_002936_010--Hb_006570_080 Hb_002936_010--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_002936_010--Hb_005588_060 Hb_000720_040 Hb_000720_040 Hb_002936_010--Hb_000720_040 Hb_003994_230 Hb_003994_230 Hb_002936_010--Hb_003994_230 Hb_001359_050--Hb_008725_230 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_001359_050--Hb_006570_080 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_000173_280 Hb_000173_280 Hb_001359_050--Hb_000173_280 Hb_000589_120 Hb_000589_120 Hb_000684_380--Hb_000589_120 Hb_000768_090 Hb_000768_090 Hb_000684_380--Hb_000768_090 Hb_004058_030 Hb_004058_030 Hb_000684_380--Hb_004058_030 Hb_000684_380--Hb_001359_050 Hb_000331_550 Hb_000331_550 Hb_000684_380--Hb_000331_550 Hb_002320_040--Hb_000684_380 Hb_034552_030 Hb_034552_030 Hb_002320_040--Hb_034552_030 Hb_002320_040--Hb_002936_010 Hb_004837_240 Hb_004837_240 Hb_002320_040--Hb_004837_240 Hb_000062_070 Hb_000062_070 Hb_002320_040--Hb_000062_070 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370 Hb_006570_080--Hb_005588_060 Hb_006570_080--Hb_000173_280 Hb_000460_030 Hb_000460_030 Hb_006570_080--Hb_000460_030 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7006 10.9249 12.0904 12.065 8.37885 10.3545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.384 15.3514 9.28282 12.897 6.30995

CAGE analysis