Hb_024973_010

Information

Type -
Description -
Location Contig24973: 7927-12214
Sequence    

Annotation

kegg
ID rcu:RCOM_1762290
description hypothetical protein
nr
ID XP_012082177.1
description PREDICTED: uncharacterized protein LOC105642097 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19463 PE=4 SV=1
Gene Ontology
ID GO:0016301
description kinase superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25964: 8027-9732 , PASA_asmbl_25965: 9793-10204 , PASA_asmbl_25966: 10336-11151 , PASA_asmbl_25967: 11253-11897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024973_010 0.0 - - PREDICTED: uncharacterized protein LOC105642097 isoform X2 [Jatropha curcas]
2 Hb_000025_480 0.1167668006 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
3 Hb_003057_120 0.1240661979 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_007760_030 0.1250860893 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
5 Hb_011174_070 0.1291399758 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
6 Hb_007441_350 0.1342115489 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
7 Hb_000387_080 0.135207141 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
8 Hb_001842_070 0.1355621223 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
9 Hb_026048_100 0.1360772153 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
10 Hb_006602_020 0.1375249136 - - unknown [Medicago truncatula]
11 Hb_006602_010 0.1383927829 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
12 Hb_010402_010 0.1402607586 - - BnaC06g23470D [Brassica napus]
13 Hb_000427_030 0.1418786469 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000538_210 0.1428762172 - - ATP binding protein, putative [Ricinus communis]
15 Hb_006935_050 0.1432174957 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
16 Hb_103873_010 0.1442793064 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
17 Hb_005779_100 0.14506683 - - DNAJ [Theobroma cacao]
18 Hb_000173_170 0.1450882722 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
19 Hb_002357_040 0.145814952 - - latex-abundant protein [Hevea brasiliensis]
20 Hb_000122_130 0.1461431437 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_024973_010 Hb_024973_010 Hb_000025_480 Hb_000025_480 Hb_024973_010--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_024973_010--Hb_003057_120 Hb_007760_030 Hb_007760_030 Hb_024973_010--Hb_007760_030 Hb_011174_070 Hb_011174_070 Hb_024973_010--Hb_011174_070 Hb_007441_350 Hb_007441_350 Hb_024973_010--Hb_007441_350 Hb_000387_080 Hb_000387_080 Hb_024973_010--Hb_000387_080 Hb_002357_040 Hb_002357_040 Hb_000025_480--Hb_002357_040 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_003057_120--Hb_011174_070 Hb_003057_120--Hb_000387_080 Hb_005357_150 Hb_005357_150 Hb_003057_120--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_003057_120--Hb_001366_220 Hb_001981_090 Hb_001981_090 Hb_003057_120--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_003057_120--Hb_000805_090 Hb_000173_170 Hb_000173_170 Hb_007760_030--Hb_000173_170 Hb_007152_020 Hb_007152_020 Hb_007760_030--Hb_007152_020 Hb_001842_070 Hb_001842_070 Hb_007760_030--Hb_001842_070 Hb_006693_030 Hb_006693_030 Hb_007760_030--Hb_006693_030 Hb_011224_080 Hb_011224_080 Hb_007760_030--Hb_011224_080 Hb_000427_030 Hb_000427_030 Hb_011174_070--Hb_000427_030 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_011174_070--Hb_000805_090 Hb_026048_100 Hb_026048_100 Hb_007441_350--Hb_026048_100 Hb_002007_270 Hb_002007_270 Hb_007441_350--Hb_002007_270 Hb_007441_350--Hb_007760_030 Hb_063134_010 Hb_063134_010 Hb_007441_350--Hb_063134_010 Hb_007441_350--Hb_011224_080 Hb_000836_070 Hb_000836_070 Hb_007441_350--Hb_000836_070 Hb_000387_080--Hb_001366_220 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.73768 1.06799 2.2029 0.979565 10.0423 16.862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.25072 7.22853 19.8048 1.50008 3.1164

CAGE analysis