Hb_024973_020

Information

Type -
Description -
Location Contig24973: 24718-29485
Sequence    

Annotation

kegg
ID rcu:RCOM_1767510
description Protein regulator of cytokinesis, putative
nr
ID XP_002513279.1
description Protein regulator of cytokinesis, putative [Ricinus communis]
swissprot
ID Q9FHM4
description 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1
trembl
ID B9RHR0
description Protein regulator of cytokinesis, putative OS=Ricinus communis GN=RCOM_1767510 PE=4 SV=1
Gene Ontology
ID GO:0008017
description 65-kda microtubule-associated protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25969: 24945-25889 , PASA_asmbl_25970: 24945-25816 , PASA_asmbl_25971: 27172-27802 , PASA_asmbl_25972: 28388-29326 , PASA_asmbl_25973: 29392-30262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024973_020 0.0 - - Protein regulator of cytokinesis, putative [Ricinus communis]
2 Hb_012653_010 0.0988578537 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
3 Hb_038044_010 0.106156138 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
4 Hb_004218_050 0.1077123899 - - annexin [Manihot esculenta]
5 Hb_001501_070 0.1126078927 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
6 Hb_008406_100 0.1160392086 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
7 Hb_001761_010 0.1189765452 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
8 Hb_003095_100 0.1262717087 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007545_110 0.1274489494 - - catalytic, putative [Ricinus communis]
10 Hb_007943_180 0.1282959239 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
11 Hb_029510_130 0.1310674095 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
12 Hb_002942_120 0.1383938852 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
13 Hb_000347_140 0.1396430792 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000960_120 0.1428789133 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
15 Hb_003109_010 0.143748658 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
16 Hb_003935_090 0.1439499194 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
17 Hb_002232_310 0.1441404543 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
18 Hb_000365_210 0.1486699499 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
19 Hb_022092_040 0.1490085378 - - PREDICTED: serine/arginine repetitive matrix protein 1 [Jatropha curcas]
20 Hb_028487_120 0.1534799589 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]

Gene co-expression network

sample Hb_024973_020 Hb_024973_020 Hb_012653_010 Hb_012653_010 Hb_024973_020--Hb_012653_010 Hb_038044_010 Hb_038044_010 Hb_024973_020--Hb_038044_010 Hb_004218_050 Hb_004218_050 Hb_024973_020--Hb_004218_050 Hb_001501_070 Hb_001501_070 Hb_024973_020--Hb_001501_070 Hb_008406_100 Hb_008406_100 Hb_024973_020--Hb_008406_100 Hb_001761_010 Hb_001761_010 Hb_024973_020--Hb_001761_010 Hb_012653_010--Hb_004218_050 Hb_001343_120 Hb_001343_120 Hb_012653_010--Hb_001343_120 Hb_003935_090 Hb_003935_090 Hb_012653_010--Hb_003935_090 Hb_000042_390 Hb_000042_390 Hb_012653_010--Hb_000042_390 Hb_001536_020 Hb_001536_020 Hb_012653_010--Hb_001536_020 Hb_038044_010--Hb_001501_070 Hb_029510_130 Hb_029510_130 Hb_038044_010--Hb_029510_130 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_001478_020 Hb_001478_020 Hb_038044_010--Hb_001478_020 Hb_002942_120 Hb_002942_120 Hb_038044_010--Hb_002942_120 Hb_004218_050--Hb_002942_120 Hb_010683_070 Hb_010683_070 Hb_004218_050--Hb_010683_070 Hb_004218_050--Hb_001343_120 Hb_004223_170 Hb_004223_170 Hb_004218_050--Hb_004223_170 Hb_001501_070--Hb_001478_020 Hb_010180_030 Hb_010180_030 Hb_001501_070--Hb_010180_030 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_001501_070--Hb_029510_130 Hb_005162_130 Hb_005162_130 Hb_008406_100--Hb_005162_130 Hb_002007_280 Hb_002007_280 Hb_008406_100--Hb_002007_280 Hb_000345_410 Hb_000345_410 Hb_008406_100--Hb_000345_410 Hb_008406_100--Hb_000365_210 Hb_008406_100--Hb_001501_070 Hb_012753_150 Hb_012753_150 Hb_001761_010--Hb_012753_150 Hb_000028_530 Hb_000028_530 Hb_001761_010--Hb_000028_530 Hb_001761_010--Hb_000365_210 Hb_000960_120 Hb_000960_120 Hb_001761_010--Hb_000960_120 Hb_002232_310 Hb_002232_310 Hb_001761_010--Hb_002232_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.930887 1.34864 19.0363 5.07768 1.01695 0.734746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383872 0.468189 0.344931 1.92028 2.62769

CAGE analysis