Hb_024990_010

Information

Type -
Description -
Location Contig24990: 4210-6934
Sequence    

Annotation

kegg
ID rcu:RCOM_0802990
description lupus la ribonucleoprotein, putative
nr
ID XP_012077445.1
description PREDICTED: la protein 1 [Jatropha curcas]
swissprot
ID Q93ZV7
description La protein 1 OS=Arabidopsis thaliana GN=LA1 PE=1 SV=1
trembl
ID A0A067KPM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07781 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26035: 4219-4548 , PASA_asmbl_26036: 5164-5535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024990_010 0.0 - - PREDICTED: la protein 1 [Jatropha curcas]
2 Hb_000331_190 0.0562367407 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
3 Hb_000531_090 0.0653436592 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
4 Hb_125092_020 0.0673734978 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
5 Hb_000340_160 0.070401864 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
6 Hb_001221_040 0.0727154638 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
7 Hb_007668_040 0.0735964106 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
8 Hb_002044_060 0.076401646 - - elongation factor ts, putative [Ricinus communis]
9 Hb_002652_040 0.0786163642 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
10 Hb_004450_010 0.0789745516 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
11 Hb_002942_080 0.0808543805 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
12 Hb_000789_080 0.0812047963 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
13 Hb_001616_090 0.0818958948 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
14 Hb_002883_010 0.0831424261 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
15 Hb_006913_040 0.0840850206 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
16 Hb_007416_310 0.0857071269 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
17 Hb_001301_210 0.085711379 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
18 Hb_005214_060 0.085745992 - - catalytic, putative [Ricinus communis]
19 Hb_005129_050 0.0860788958 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
20 Hb_002048_090 0.0862180818 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]

Gene co-expression network

sample Hb_024990_010 Hb_024990_010 Hb_000331_190 Hb_000331_190 Hb_024990_010--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_024990_010--Hb_000531_090 Hb_125092_020 Hb_125092_020 Hb_024990_010--Hb_125092_020 Hb_000340_160 Hb_000340_160 Hb_024990_010--Hb_000340_160 Hb_001221_040 Hb_001221_040 Hb_024990_010--Hb_001221_040 Hb_007668_040 Hb_007668_040 Hb_024990_010--Hb_007668_040 Hb_002652_040 Hb_002652_040 Hb_000331_190--Hb_002652_040 Hb_000331_190--Hb_125092_020 Hb_000035_040 Hb_000035_040 Hb_000331_190--Hb_000035_040 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000331_190--Hb_000340_160 Hb_000531_090--Hb_125092_020 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_125092_020--Hb_002652_040 Hb_125092_020--Hb_000035_040 Hb_125092_020--Hb_000567_010 Hb_000239_070 Hb_000239_070 Hb_000340_160--Hb_000239_070 Hb_000699_250 Hb_000699_250 Hb_000340_160--Hb_000699_250 Hb_000340_160--Hb_000567_010 Hb_000340_160--Hb_125092_020 Hb_021409_170 Hb_021409_170 Hb_001221_040--Hb_021409_170 Hb_026099_010 Hb_026099_010 Hb_001221_040--Hb_026099_010 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_000046_440 Hb_000046_440 Hb_001221_040--Hb_000046_440 Hb_002942_080 Hb_002942_080 Hb_007668_040--Hb_002942_080 Hb_012132_040 Hb_012132_040 Hb_007668_040--Hb_012132_040 Hb_000364_060 Hb_000364_060 Hb_007668_040--Hb_000364_060 Hb_001341_050 Hb_001341_050 Hb_007668_040--Hb_001341_050 Hb_003006_060 Hb_003006_060 Hb_007668_040--Hb_003006_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.0996 25.1488 19.6954 12.6126 49.2935 78.2164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0728 18.712 17.6683 27.8818 11.2223

CAGE analysis