Hb_024991_010

Information

Type -
Description -
Location Contig24991: 666-1059
Sequence    

Annotation

kegg
ID brp:103864460
description protein RER1C
nr
ID KJB43759.1
description hypothetical protein B456_007G217100 [Gossypium raimondii]
swissprot
ID O48670
description Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1
trembl
ID A0A0D2SHQ9
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G217100 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein rer1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024991_010 0.0 - - hypothetical protein B456_007G217100 [Gossypium raimondii]
2 Hb_000684_440 0.1700024078 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
3 Hb_000346_040 0.1746613428 - - -
4 Hb_008176_010 0.1931592167 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
5 Hb_012760_190 0.1971161732 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
6 Hb_002188_120 0.1976372765 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
7 Hb_001953_080 0.2009795478 - - pseudouridine synthase family protein, partial [Manihot esculenta]
8 Hb_001284_010 0.2021425924 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
9 Hb_000471_110 0.2044832126 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
10 Hb_004935_060 0.2073702749 - - Uncharacterized protein isoform 2 [Theobroma cacao]
11 Hb_003030_030 0.2077976276 - - -
12 Hb_001546_060 0.2087428216 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
13 Hb_000406_130 0.2092085035 - - vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_003141_070 0.2096606398 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
15 Hb_001010_070 0.2105233492 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
16 Hb_001006_020 0.2105818396 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
17 Hb_000300_290 0.2108461647 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
18 Hb_001024_020 0.2114153365 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
19 Hb_002307_170 0.2119992919 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_000010_340 0.2126713576 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_024991_010 Hb_024991_010 Hb_000684_440 Hb_000684_440 Hb_024991_010--Hb_000684_440 Hb_000346_040 Hb_000346_040 Hb_024991_010--Hb_000346_040 Hb_008176_010 Hb_008176_010 Hb_024991_010--Hb_008176_010 Hb_012760_190 Hb_012760_190 Hb_024991_010--Hb_012760_190 Hb_002188_120 Hb_002188_120 Hb_024991_010--Hb_002188_120 Hb_001953_080 Hb_001953_080 Hb_024991_010--Hb_001953_080 Hb_001010_070 Hb_001010_070 Hb_000684_440--Hb_001010_070 Hb_002304_070 Hb_002304_070 Hb_000684_440--Hb_002304_070 Hb_012627_020 Hb_012627_020 Hb_000684_440--Hb_012627_020 Hb_000684_440--Hb_000346_040 Hb_020665_010 Hb_020665_010 Hb_000684_440--Hb_020665_010 Hb_004020_020 Hb_004020_020 Hb_000684_440--Hb_004020_020 Hb_001006_020 Hb_001006_020 Hb_000346_040--Hb_001006_020 Hb_001235_030 Hb_001235_030 Hb_000346_040--Hb_001235_030 Hb_006420_100 Hb_006420_100 Hb_000346_040--Hb_006420_100 Hb_000072_180 Hb_000072_180 Hb_000346_040--Hb_000072_180 Hb_001234_100 Hb_001234_100 Hb_000346_040--Hb_001234_100 Hb_001390_130 Hb_001390_130 Hb_000346_040--Hb_001390_130 Hb_000406_130 Hb_000406_130 Hb_008176_010--Hb_000406_130 Hb_006275_070 Hb_006275_070 Hb_008176_010--Hb_006275_070 Hb_000471_110 Hb_000471_110 Hb_008176_010--Hb_000471_110 Hb_000069_210 Hb_000069_210 Hb_008176_010--Hb_000069_210 Hb_001936_130 Hb_001936_130 Hb_008176_010--Hb_001936_130 Hb_001352_020 Hb_001352_020 Hb_008176_010--Hb_001352_020 Hb_114336_020 Hb_114336_020 Hb_012760_190--Hb_114336_020 Hb_103118_010 Hb_103118_010 Hb_012760_190--Hb_103118_010 Hb_008554_070 Hb_008554_070 Hb_012760_190--Hb_008554_070 Hb_001439_060 Hb_001439_060 Hb_012760_190--Hb_001439_060 Hb_001491_010 Hb_001491_010 Hb_012760_190--Hb_001491_010 Hb_004116_140 Hb_004116_140 Hb_012760_190--Hb_004116_140 Hb_000111_420 Hb_000111_420 Hb_002188_120--Hb_000111_420 Hb_007922_020 Hb_007922_020 Hb_002188_120--Hb_007922_020 Hb_001546_060 Hb_001546_060 Hb_002188_120--Hb_001546_060 Hb_000631_080 Hb_000631_080 Hb_002188_120--Hb_000631_080 Hb_001369_750 Hb_001369_750 Hb_002188_120--Hb_001369_750 Hb_009658_020 Hb_009658_020 Hb_002188_120--Hb_009658_020 Hb_011249_020 Hb_011249_020 Hb_001953_080--Hb_011249_020 Hb_003020_260 Hb_003020_260 Hb_001953_080--Hb_003020_260 Hb_001307_030 Hb_001307_030 Hb_001953_080--Hb_001307_030 Hb_000297_120 Hb_000297_120 Hb_001953_080--Hb_000297_120 Hb_025098_010 Hb_025098_010 Hb_001953_080--Hb_025098_010 Hb_000649_140 Hb_000649_140 Hb_001953_080--Hb_000649_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.533363 0.344338 0 2.19428 1.87759 2.59831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80936 2.39105 3.68056 2.01849 4.60294

CAGE analysis