Hb_025012_010

Information

Type -
Description -
Location Contig25012: 13795-24411
Sequence    

Annotation

kegg
ID vvi:100253220
description importin-4
nr
ID XP_002267673.1
description PREDICTED: importin-4 [Vitis vinifera]
swissprot
ID O60100
description Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1
trembl
ID D7SZV0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g02160 PE=4 SV=1
Gene Ontology
ID GO:0005829
description importin beta-2 subunit family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26193: 13780-24289
cDNA
(Sanger)
(ID:Location)		 019_P05.ab1: 13780-16104

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025012_010 0.0 - - PREDICTED: importin-4 [Vitis vinifera]
2 Hb_002027_270 0.0605591877 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
3 Hb_004619_050 0.0690189789 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
4 Hb_000347_130 0.0691973855 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
5 Hb_007904_220 0.0716350162 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
6 Hb_003428_070 0.0744228357 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
7 Hb_001040_160 0.0758507156 - - glutaredoxin, grx, putative [Ricinus communis]
8 Hb_008714_020 0.0763726623 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
9 Hb_000436_040 0.0776891472 - - PREDICTED: transportin-1 [Jatropha curcas]
10 Hb_004450_010 0.078253098 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
11 Hb_042487_010 0.0786440988 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
12 Hb_000316_030 0.0788542262 - - zinc finger protein, putative [Ricinus communis]
13 Hb_067345_010 0.0790022304 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
14 Hb_005494_020 0.0798170009 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
15 Hb_000739_220 0.0800765354 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
16 Hb_000600_070 0.0830308473 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
17 Hb_081879_030 0.0837348292 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
18 Hb_001943_010 0.0840396049 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
19 Hb_000699_250 0.0843741425 - - Poly(rC)-binding protein, putative [Ricinus communis]
20 Hb_000743_050 0.0862263814 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_025012_010 Hb_025012_010 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_000347_130 Hb_000347_130 Hb_025012_010--Hb_000347_130 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_002027_270--Hb_004619_050 Hb_000567_050 Hb_000567_050 Hb_002027_270--Hb_000567_050 Hb_000031_220 Hb_000031_220 Hb_002027_270--Hb_000031_220 Hb_000600_070 Hb_000600_070 Hb_002027_270--Hb_000600_070 Hb_000429_120 Hb_000429_120 Hb_002027_270--Hb_000429_120 Hb_032458_010 Hb_032458_010 Hb_004619_050--Hb_032458_010 Hb_004447_060 Hb_004447_060 Hb_004619_050--Hb_004447_060 Hb_004619_050--Hb_003428_070 Hb_004619_050--Hb_000429_120 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_000347_130--Hb_003428_070 Hb_005205_020 Hb_005205_020 Hb_007904_220--Hb_005205_020 Hb_001221_040 Hb_001221_040 Hb_007904_220--Hb_001221_040 Hb_002067_150 Hb_002067_150 Hb_007904_220--Hb_002067_150 Hb_000436_040 Hb_000436_040 Hb_007904_220--Hb_000436_040 Hb_002028_170 Hb_002028_170 Hb_007904_220--Hb_002028_170 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_000316_030 Hb_000316_030 Hb_001040_160--Hb_000316_030 Hb_008714_020 Hb_008714_020 Hb_001040_160--Hb_008714_020 Hb_001609_010 Hb_001609_010 Hb_001040_160--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_001040_160--Hb_063047_010 Hb_005635_010 Hb_005635_010 Hb_001040_160--Hb_005635_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9474 13.2255 4.93715 9.20875 22.6529 41.7656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0175 9.91762 13.5479 16.6549 7.82966

CAGE analysis