Hb_025098_010

Information

Type -
Description -
Location Contig25098: 8057-9615
Sequence    

Annotation

kegg
ID rcu:RCOM_1556410
description protoheme IX farnesyltransferase, putative
nr
ID XP_012068426.1
description PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID O64886
description Protoheme IX farnesyltransferase, mitochondrial OS=Arabidopsis thaliana GN=COX10 PE=2 SV=4
trembl
ID A0A067LAI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03610 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protoheme ix mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025098_010 0.0 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_185255_010 0.0526911885 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
3 Hb_000310_090 0.0640586181 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
4 Hb_001307_030 0.0657881281 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
5 Hb_005144_050 0.066581605 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
6 Hb_002289_080 0.0763767814 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
7 Hb_008841_020 0.0806945495 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
8 Hb_001366_180 0.0808273314 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
9 Hb_001489_110 0.0819593313 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
10 Hb_001189_070 0.083098439 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
11 Hb_001353_010 0.0832831089 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
12 Hb_006683_070 0.0832929654 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
13 Hb_002284_230 0.0853481298 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
14 Hb_000297_120 0.088393639 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
15 Hb_086085_020 0.0888622891 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
16 Hb_001006_020 0.0895447783 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
17 Hb_000060_050 0.0896568212 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
18 Hb_002518_210 0.0909240928 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
19 Hb_003025_100 0.0910049303 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
20 Hb_006478_020 0.0920519773 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_025098_010 Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_005144_050 Hb_005144_050 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_006683_070 Hb_006683_070 Hb_185255_010--Hb_006683_070 Hb_185255_010--Hb_005144_050 Hb_001269_190 Hb_001269_190 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_185255_010--Hb_001307_030 Hb_001168_020 Hb_001168_020 Hb_000310_090--Hb_001168_020 Hb_001189_070 Hb_001189_070 Hb_000310_090--Hb_001189_070 Hb_000310_090--Hb_002289_080 Hb_086085_020 Hb_086085_020 Hb_000310_090--Hb_086085_020 Hb_001314_050 Hb_001314_050 Hb_000310_090--Hb_001314_050 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_011249_020 Hb_011249_020 Hb_001307_030--Hb_011249_020 Hb_000297_120 Hb_000297_120 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_001366_180 Hb_001366_180 Hb_005144_050--Hb_001366_180 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_002289_080--Hb_001168_020 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_008841_020--Hb_001189_070 Hb_001828_150 Hb_001828_150 Hb_008841_020--Hb_001828_150 Hb_000599_250 Hb_000599_250 Hb_008841_020--Hb_000599_250 Hb_000200_020 Hb_000200_020 Hb_008841_020--Hb_000200_020 Hb_008841_020--Hb_006478_020 Hb_001489_080 Hb_001489_080 Hb_008841_020--Hb_001489_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22195 3.17287 5.13441 13.068 3.89221 7.95743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93276 11.3405 8.67193 7.90714 11.1435

CAGE analysis