Hb_025163_020

Information

Type -
Description -
Location Contig25163: 16517-18468
Sequence    

Annotation

kegg
ID vvi:100854729
description probable terpene synthase 13
nr
ID XP_012091436.1
description PREDICTED: probable terpene synthase 13 [Jatropha curcas]
swissprot
ID B9RXW4
description Probable terpene synthase 13 OS=Ricinus communis GN=TPS13 PE=3 SV=1
trembl
ID A0A067JDK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21304 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ( )-nerolidol synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025163_020 0.0 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
2 Hb_008215_020 0.0320378866 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_004531_060 0.1146210719 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
4 Hb_005701_100 0.1232682199 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
5 Hb_000890_140 0.1242678698 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
6 Hb_005116_030 0.1280795116 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
7 Hb_000397_170 0.128705214 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000069_650 0.1295516096 - - conserved hypothetical protein [Ricinus communis]
9 Hb_034498_010 0.1334121423 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
10 Hb_003847_060 0.1403464108 - - syntaxin, putative [Ricinus communis]
11 Hb_003226_060 0.1420566979 - - Pectinesterase-2 precursor, putative [Ricinus communis]
12 Hb_003656_080 0.1443796408 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
13 Hb_074674_010 0.1445468621 - - Cell division cycle protein cdt2, putative [Ricinus communis]
14 Hb_001754_100 0.1451789078 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
15 Hb_001384_030 0.147685197 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
16 Hb_023386_070 0.1494044877 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
17 Hb_185666_010 0.1496331821 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
18 Hb_010369_020 0.1513212448 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
19 Hb_000856_390 0.1514520026 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004154_010 0.1515295465 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_025163_020 Hb_025163_020 Hb_008215_020 Hb_008215_020 Hb_025163_020--Hb_008215_020 Hb_004531_060 Hb_004531_060 Hb_025163_020--Hb_004531_060 Hb_005701_100 Hb_005701_100 Hb_025163_020--Hb_005701_100 Hb_000890_140 Hb_000890_140 Hb_025163_020--Hb_000890_140 Hb_005116_030 Hb_005116_030 Hb_025163_020--Hb_005116_030 Hb_000397_170 Hb_000397_170 Hb_025163_020--Hb_000397_170 Hb_008215_020--Hb_004531_060 Hb_008215_020--Hb_005701_100 Hb_185666_010 Hb_185666_010 Hb_008215_020--Hb_185666_010 Hb_000069_650 Hb_000069_650 Hb_008215_020--Hb_000069_650 Hb_008215_020--Hb_005116_030 Hb_001263_030 Hb_001263_030 Hb_004531_060--Hb_001263_030 Hb_003656_080 Hb_003656_080 Hb_004531_060--Hb_003656_080 Hb_020025_030 Hb_020025_030 Hb_004531_060--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_004531_060--Hb_000140_200 Hb_006588_100 Hb_006588_100 Hb_004531_060--Hb_006588_100 Hb_001950_090 Hb_001950_090 Hb_004531_060--Hb_001950_090 Hb_036602_010 Hb_036602_010 Hb_005701_100--Hb_036602_010 Hb_014549_010 Hb_014549_010 Hb_005701_100--Hb_014549_010 Hb_012092_040 Hb_012092_040 Hb_005701_100--Hb_012092_040 Hb_177195_010 Hb_177195_010 Hb_005701_100--Hb_177195_010 Hb_000527_020 Hb_000527_020 Hb_000890_140--Hb_000527_020 Hb_003368_070 Hb_003368_070 Hb_000890_140--Hb_003368_070 Hb_001699_070 Hb_001699_070 Hb_000890_140--Hb_001699_070 Hb_000856_390 Hb_000856_390 Hb_000890_140--Hb_000856_390 Hb_007245_030 Hb_007245_030 Hb_000890_140--Hb_007245_030 Hb_034498_010 Hb_034498_010 Hb_000890_140--Hb_034498_010 Hb_005116_030--Hb_000069_650 Hb_020301_020 Hb_020301_020 Hb_005116_030--Hb_020301_020 Hb_072201_010 Hb_072201_010 Hb_005116_030--Hb_072201_010 Hb_005116_030--Hb_001950_090 Hb_003226_060 Hb_003226_060 Hb_000397_170--Hb_003226_060 Hb_001754_100 Hb_001754_100 Hb_000397_170--Hb_001754_100 Hb_005599_010 Hb_005599_010 Hb_000397_170--Hb_005599_010 Hb_000574_180 Hb_000574_180 Hb_000397_170--Hb_000574_180 Hb_150745_010 Hb_150745_010 Hb_000397_170--Hb_150745_010 Hb_000256_170 Hb_000256_170 Hb_000397_170--Hb_000256_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.471017 6.39519 4.13018 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.991396 0

CAGE analysis