Hb_025190_010

Information

Type -
Description -
Location Contig25190: 3-469
Sequence    

Annotation

kegg
ID rcu:RCOM_1443460
description hypothetical protein
nr
ID XP_002512780.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A2ZIW7
description Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1
trembl
ID B9RGS1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443460 PE=4 SV=1
Gene Ontology
ID GO:0031047
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025190_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003688_110 0.1282135308 - - -
3 Hb_002200_050 0.1490408391 - - unknown [Lotus japonicus]
4 Hb_002482_040 0.1663465917 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
5 Hb_000174_040 0.1736599337 - - -
6 Hb_026228_010 0.175686001 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029142_020 0.1789498788 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
8 Hb_001260_030 0.1837641308 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000160_160 0.1837652881 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
10 Hb_041205_010 0.1840853911 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002482_060 0.1868432485 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
12 Hb_030982_020 0.1881111899 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
13 Hb_025288_010 0.1885600855 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
14 Hb_000120_190 0.1907780939 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
15 Hb_001998_140 0.1929359049 - - -
16 Hb_007763_060 0.1980581415 - - BnaA02g23510D [Brassica napus]
17 Hb_175976_010 0.1986998814 - - -
18 Hb_000810_020 0.2009843061 - - -
19 Hb_029142_070 0.2018518552 - - -
20 Hb_002078_260 0.2044407511 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_025190_010 Hb_025190_010 Hb_003688_110 Hb_003688_110 Hb_025190_010--Hb_003688_110 Hb_002200_050 Hb_002200_050 Hb_025190_010--Hb_002200_050 Hb_002482_040 Hb_002482_040 Hb_025190_010--Hb_002482_040 Hb_000174_040 Hb_000174_040 Hb_025190_010--Hb_000174_040 Hb_026228_010 Hb_026228_010 Hb_025190_010--Hb_026228_010 Hb_029142_020 Hb_029142_020 Hb_025190_010--Hb_029142_020 Hb_003688_110--Hb_002200_050 Hb_007763_060 Hb_007763_060 Hb_003688_110--Hb_007763_060 Hb_041205_010 Hb_041205_010 Hb_003688_110--Hb_041205_010 Hb_004235_030 Hb_004235_030 Hb_003688_110--Hb_004235_030 Hb_005085_030 Hb_005085_030 Hb_003688_110--Hb_005085_030 Hb_000160_160 Hb_000160_160 Hb_002200_050--Hb_000160_160 Hb_008447_030 Hb_008447_030 Hb_002200_050--Hb_008447_030 Hb_025288_010 Hb_025288_010 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020 Hb_076175_010 Hb_076175_010 Hb_002482_040--Hb_076175_010 Hb_001638_240 Hb_001638_240 Hb_002482_040--Hb_001638_240 Hb_005588_070 Hb_005588_070 Hb_002482_040--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_002482_040--Hb_000672_120 Hb_030982_020 Hb_030982_020 Hb_002482_040--Hb_030982_020 Hb_002482_040--Hb_000174_040 Hb_001195_490 Hb_001195_490 Hb_000174_040--Hb_001195_490 Hb_000174_040--Hb_076175_010 Hb_002078_260 Hb_002078_260 Hb_000174_040--Hb_002078_260 Hb_027760_020 Hb_027760_020 Hb_000174_040--Hb_027760_020 Hb_000329_560 Hb_000329_560 Hb_026228_010--Hb_000329_560 Hb_005679_070 Hb_005679_070 Hb_026228_010--Hb_005679_070 Hb_001998_140 Hb_001998_140 Hb_026228_010--Hb_001998_140 Hb_026228_010--Hb_003688_110 Hb_026228_010--Hb_002200_050 Hb_000810_020 Hb_000810_020 Hb_026228_010--Hb_000810_020 Hb_000120_190 Hb_000120_190 Hb_029142_020--Hb_000120_190 Hb_011214_100 Hb_011214_100 Hb_029142_020--Hb_011214_100 Hb_006198_090 Hb_006198_090 Hb_029142_020--Hb_006198_090 Hb_029142_020--Hb_030982_020 Hb_011037_020 Hb_011037_020 Hb_029142_020--Hb_011037_020 Hb_010368_030 Hb_010368_030 Hb_029142_020--Hb_010368_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157543 0.180584 0 2.98549 0.310959 5.55001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62005 2.06381 2.09628 1.09475 1.82093

CAGE analysis