Hb_025193_050

Information

Type -
Description -
Location Contig25193: 51661-53985
Sequence    

Annotation

kegg
ID rcu:RCOM_1438490
description hypothetical protein
nr
ID XP_012088702.1
description PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
swissprot
ID F4KF27
description Mediator-associated protein 2 OS=Arabidopsis thaliana GN=At5g64680 PE=1 SV=1
trembl
ID A0A067JHD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23085 PE=4 SV=1
Gene Ontology
ID GO:0005730
description mediator-associated protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26320: 53485-53813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025193_050 0.0 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
2 Hb_012515_010 0.0518427405 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
3 Hb_011139_020 0.0654370978 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
4 Hb_024650_050 0.0679679629 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
5 Hb_004595_020 0.0704186029 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
6 Hb_000152_430 0.0717731968 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
7 Hb_004453_150 0.0787474463 - - BnaC02g13240D [Brassica napus]
8 Hb_000365_380 0.0789275154 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000015_210 0.0826970989 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
10 Hb_011161_040 0.083039335 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
11 Hb_005686_110 0.0849945103 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
12 Hb_001584_070 0.0857529491 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001840_120 0.0865386195 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
14 Hb_000676_290 0.0884902409 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
15 Hb_000465_060 0.0891989555 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
16 Hb_004117_290 0.0896424682 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001019_090 0.0910943656 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
18 Hb_000175_400 0.0916086455 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000317_340 0.0919067593 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001235_070 0.093328159 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_025193_050 Hb_025193_050 Hb_012515_010 Hb_012515_010 Hb_025193_050--Hb_012515_010 Hb_011139_020 Hb_011139_020 Hb_025193_050--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_025193_050--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_025193_050--Hb_004595_020 Hb_000152_430 Hb_000152_430 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_000465_060 Hb_000465_060 Hb_012515_010--Hb_000465_060 Hb_001584_070 Hb_001584_070 Hb_012515_010--Hb_001584_070 Hb_012515_010--Hb_004595_020 Hb_012515_010--Hb_011139_020 Hb_012515_010--Hb_024650_050 Hb_011139_020--Hb_000152_430 Hb_011139_020--Hb_024650_050 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_000015_210 Hb_000015_210 Hb_024650_050--Hb_000015_210 Hb_001019_090 Hb_001019_090 Hb_024650_050--Hb_001019_090 Hb_024650_050--Hb_000152_430 Hb_004595_020--Hb_001840_120 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_000152_430--Hb_001019_090 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.756 5.97947 8.67076 11.0005 31.1263 64.0806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.9293 67.4629 28.2976 14.3584 6.81552

CAGE analysis