Hb_025194_040

Information

Type -
Description -
Location Contig25194: 24677-33043
Sequence    

Annotation

kegg
ID rcu:RCOM_1078940
description hypothetical protein
nr
ID XP_012085737.1
description PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18007 PE=4 SV=1
Gene Ontology
ID GO:0005515
description perq amino acid-rich with gyf domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26326: 24817-24950 , PASA_asmbl_26327: 24978-26933 , PASA_asmbl_26328: 25048-26848 , PASA_asmbl_26329: 28002-28889 , PASA_asmbl_26330: 28890-29274 , PASA_asmbl_26331: 29733-30490 , PASA_asmbl_26332: 30746-32307 , PASA_asmbl_26333: 31416-31814 , PASA_asmbl_26334: 32006-32165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025194_040 0.0 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
2 Hb_000035_290 0.0606168686 - - RNA recognition motif-containing family protein [Populus trichocarpa]
3 Hb_002784_110 0.0618807826 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
4 Hb_000343_120 0.0620868384 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
5 Hb_000166_130 0.0672073369 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000540_060 0.0683033964 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
7 Hb_009476_040 0.0703027174 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000183_020 0.0716853917 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
9 Hb_000922_370 0.0733589831 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
10 Hb_000446_120 0.0738843264 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
11 Hb_003044_020 0.0760066102 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
12 Hb_001195_320 0.0778532476 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
13 Hb_002329_040 0.0784717013 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
14 Hb_000960_100 0.0785483864 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
15 Hb_014267_010 0.0800122565 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
16 Hb_001913_060 0.0807324684 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
17 Hb_001967_030 0.0810927068 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_005496_110 0.0813677693 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
19 Hb_005701_070 0.0822542213 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
20 Hb_004128_050 0.0824094528 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_025194_040 Hb_025194_040 Hb_000035_290 Hb_000035_290 Hb_025194_040--Hb_000035_290 Hb_002784_110 Hb_002784_110 Hb_025194_040--Hb_002784_110 Hb_000343_120 Hb_000343_120 Hb_025194_040--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_009476_040 Hb_009476_040 Hb_025194_040--Hb_009476_040 Hb_000035_290--Hb_000166_130 Hb_000035_290--Hb_000343_120 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_000035_290--Hb_002784_110 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_000343_120--Hb_000166_130 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_001199_100 Hb_001199_100 Hb_000343_120--Hb_001199_100 Hb_003029_110 Hb_003029_110 Hb_000343_120--Hb_003029_110 Hb_000166_130--Hb_003029_110 Hb_001195_320 Hb_001195_320 Hb_000166_130--Hb_001195_320 Hb_003371_110 Hb_003371_110 Hb_000166_130--Hb_003371_110 Hb_000166_130--Hb_001199_100 Hb_001967_030 Hb_001967_030 Hb_000540_060--Hb_001967_030 Hb_000540_060--Hb_002784_110 Hb_007576_120 Hb_007576_120 Hb_000540_060--Hb_007576_120 Hb_000540_060--Hb_005496_110 Hb_001472_090 Hb_001472_090 Hb_000540_060--Hb_001472_090 Hb_009476_040--Hb_000183_020 Hb_000922_370 Hb_000922_370 Hb_009476_040--Hb_000922_370 Hb_074969_010 Hb_074969_010 Hb_009476_040--Hb_074969_010 Hb_007426_130 Hb_007426_130 Hb_009476_040--Hb_007426_130 Hb_009476_040--Hb_002784_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1106 17.5127 3.94287 9.79535 16.4161 16.8915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.02996 7.50074 9.48123 11.5434 12.2643

CAGE analysis