Hb_025194_070

Information

Type -
Description -
Location Contig25194: 42352-46763
Sequence    

Annotation

kegg
ID rcu:RCOM_1078970
description amino acid binding protein, putative
nr
ID XP_012085730.1
description PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
swissprot
ID Q8LJW3
description ACT domain-containing protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=2 SV=1
trembl
ID A0A067K3L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18003 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing protein acr4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025194_070 0.0 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
2 Hb_000922_050 0.1114735525 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
3 Hb_005784_050 0.1209916887 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_003427_070 0.1211555034 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
5 Hb_023768_010 0.1233709182 - - -
6 Hb_084304_010 0.1249960483 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
7 Hb_004453_060 0.1293010663 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
8 Hb_001417_090 0.1322234625 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
9 Hb_002053_020 0.1346652711 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
10 Hb_000270_790 0.1390456432 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
11 Hb_000085_410 0.1398087634 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
12 Hb_003777_150 0.1399784075 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
13 Hb_000628_060 0.1445033001 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
14 Hb_000614_120 0.149945371 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
15 Hb_150573_010 0.1500569885 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
16 Hb_000011_250 0.152163711 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
17 Hb_000739_190 0.152731856 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_001675_290 0.1547963918 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
19 Hb_000120_560 0.1552680892 - - protein with unknown function [Ricinus communis]
20 Hb_000327_320 0.1563894712 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]

Gene co-expression network

sample Hb_025194_070 Hb_025194_070 Hb_000922_050 Hb_000922_050 Hb_025194_070--Hb_000922_050 Hb_005784_050 Hb_005784_050 Hb_025194_070--Hb_005784_050 Hb_003427_070 Hb_003427_070 Hb_025194_070--Hb_003427_070 Hb_023768_010 Hb_023768_010 Hb_025194_070--Hb_023768_010 Hb_084304_010 Hb_084304_010 Hb_025194_070--Hb_084304_010 Hb_004453_060 Hb_004453_060 Hb_025194_070--Hb_004453_060 Hb_000085_410 Hb_000085_410 Hb_000922_050--Hb_000085_410 Hb_000922_050--Hb_003427_070 Hb_001110_060 Hb_001110_060 Hb_000922_050--Hb_001110_060 Hb_000684_110 Hb_000684_110 Hb_000922_050--Hb_000684_110 Hb_003175_120 Hb_003175_120 Hb_000922_050--Hb_003175_120 Hb_002053_020 Hb_002053_020 Hb_005784_050--Hb_002053_020 Hb_000175_370 Hb_000175_370 Hb_005784_050--Hb_000175_370 Hb_003125_110 Hb_003125_110 Hb_005784_050--Hb_003125_110 Hb_000120_560 Hb_000120_560 Hb_005784_050--Hb_000120_560 Hb_000646_040 Hb_000646_040 Hb_005784_050--Hb_000646_040 Hb_003427_070--Hb_084304_010 Hb_000739_190 Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_003777_150 Hb_003777_150 Hb_003427_070--Hb_003777_150 Hb_003427_070--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_003427_070--Hb_039075_010 Hb_023768_010--Hb_002053_020 Hb_002640_030 Hb_002640_030 Hb_023768_010--Hb_002640_030 Hb_001810_040 Hb_001810_040 Hb_023768_010--Hb_001810_040 Hb_023768_010--Hb_000922_050 Hb_023768_010--Hb_003427_070 Hb_084304_010--Hb_003777_150 Hb_006351_050 Hb_006351_050 Hb_084304_010--Hb_006351_050 Hb_000188_140 Hb_000188_140 Hb_084304_010--Hb_000188_140 Hb_001500_020 Hb_001500_020 Hb_084304_010--Hb_001500_020 Hb_084304_010--Hb_000739_190 Hb_150573_010 Hb_150573_010 Hb_004453_060--Hb_150573_010 Hb_004732_070 Hb_004732_070 Hb_004453_060--Hb_004732_070 Hb_036029_020 Hb_036029_020 Hb_004453_060--Hb_036029_020 Hb_107658_010 Hb_107658_010 Hb_004453_060--Hb_107658_010 Hb_004453_060--Hb_003427_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167221 0.327661 0.485816 1.85901 0.012598 0.0370303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0482128 0 0.0192403 0.151399

CAGE analysis