Hb_025194_100

Information

Type -
Description -
Location Contig25194: 61788-62954
Sequence    

Annotation

kegg
ID rcu:RCOM_0902620
description Leucoanthocyanidin dioxygenase, putative (EC:1.14.11.23)
nr
ID XP_012091239.1
description PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
swissprot
ID P51092
description Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1
trembl
ID A0A067JMF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21140 PE=3 SV=1
Gene Ontology
ID GO:0005506
description leucoanthocyanidin dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26344: 61472-63847 , PASA_asmbl_26345: 60456-61998 , PASA_asmbl_26346: 61222-61368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025194_100 0.0 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
2 Hb_002289_080 0.0736084183 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
3 Hb_152371_010 0.0796951159 - - RNA-binding KH domain-containing protein [Theobroma cacao]
4 Hb_000599_300 0.0804323109 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
5 Hb_000310_090 0.0863664944 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
6 Hb_002994_030 0.0881356207 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
7 Hb_000696_330 0.0892563634 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
8 Hb_011794_080 0.0894189995 - - acyl-CoA thioesterase, putative [Ricinus communis]
9 Hb_001314_050 0.0908491246 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
10 Hb_001168_020 0.0914239282 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
11 Hb_002000_080 0.0933818257 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
12 Hb_000111_320 0.0935414897 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
13 Hb_001571_050 0.0935973176 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
14 Hb_000429_150 0.0951383769 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
15 Hb_006274_030 0.0951536431 - - F-box and wd40 domain protein, putative [Ricinus communis]
16 Hb_000421_220 0.095972443 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
17 Hb_003633_030 0.0978519537 - - f-actin capping protein alpha, putative [Ricinus communis]
18 Hb_000483_300 0.0981965198 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
19 Hb_006907_130 0.0988471796 - - unnamed protein product [Coffea canephora]
20 Hb_000078_120 0.0990200495 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_025194_100 Hb_025194_100 Hb_002289_080 Hb_002289_080 Hb_025194_100--Hb_002289_080 Hb_152371_010 Hb_152371_010 Hb_025194_100--Hb_152371_010 Hb_000599_300 Hb_000599_300 Hb_025194_100--Hb_000599_300 Hb_000310_090 Hb_000310_090 Hb_025194_100--Hb_000310_090 Hb_002994_030 Hb_002994_030 Hb_025194_100--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_025194_100--Hb_000696_330 Hb_001168_020 Hb_001168_020 Hb_002289_080--Hb_001168_020 Hb_002289_080--Hb_000310_090 Hb_005144_050 Hb_005144_050 Hb_002289_080--Hb_005144_050 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_025098_010 Hb_025098_010 Hb_002289_080--Hb_025098_010 Hb_000095_080 Hb_000095_080 Hb_152371_010--Hb_000095_080 Hb_152371_010--Hb_000310_090 Hb_003777_320 Hb_003777_320 Hb_152371_010--Hb_003777_320 Hb_152371_010--Hb_002289_080 Hb_002284_230 Hb_002284_230 Hb_152371_010--Hb_002284_230 Hb_002893_080 Hb_002893_080 Hb_000599_300--Hb_002893_080 Hb_003633_030 Hb_003633_030 Hb_000599_300--Hb_003633_030 Hb_007672_060 Hb_007672_060 Hb_000599_300--Hb_007672_060 Hb_001579_270 Hb_001579_270 Hb_000599_300--Hb_001579_270 Hb_002473_130 Hb_002473_130 Hb_000599_300--Hb_002473_130 Hb_000054_090 Hb_000054_090 Hb_000599_300--Hb_000054_090 Hb_000310_090--Hb_001168_020 Hb_001189_070 Hb_001189_070 Hb_000310_090--Hb_001189_070 Hb_000310_090--Hb_025098_010 Hb_086085_020 Hb_086085_020 Hb_000310_090--Hb_086085_020 Hb_001314_050 Hb_001314_050 Hb_000310_090--Hb_001314_050 Hb_000078_120 Hb_000078_120 Hb_002994_030--Hb_000078_120 Hb_000948_160 Hb_000948_160 Hb_002994_030--Hb_000948_160 Hb_002994_030--Hb_000696_330 Hb_189216_020 Hb_189216_020 Hb_002994_030--Hb_189216_020 Hb_006831_140 Hb_006831_140 Hb_002994_030--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002994_030--Hb_001470_030 Hb_000696_330--Hb_000078_120 Hb_011386_010 Hb_011386_010 Hb_000696_330--Hb_011386_010 Hb_004143_060 Hb_004143_060 Hb_000696_330--Hb_004143_060 Hb_002078_350 Hb_002078_350 Hb_000696_330--Hb_002078_350 Hb_000331_260 Hb_000331_260 Hb_000696_330--Hb_000331_260 Hb_000696_330--Hb_001168_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.47769 7.4701 9.2404 17.5858 10.4332 21.6305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3821 19.061 12.791 18.8501 17.933

CAGE analysis