Hb_025214_090

Information

Type -
Description -
Location Contig25214: 91890-93749
Sequence    

Annotation

kegg
ID rcu:RCOM_1119190
description clathrin assembly protein, putative (EC:1.3.1.74)
nr
ID XP_002525336.1
description clathrin assembly protein, putative [Ricinus communis]
swissprot
ID Q9ZVN6
description Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1
trembl
ID B9SH67
description Clathrin assembly protein, putative OS=Ricinus communis GN=RCOM_1119190 PE=4 SV=1
Gene Ontology
ID GO:0005543
description clathrin coat assembly protein ap180-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025214_090 0.0 - - clathrin assembly protein, putative [Ricinus communis]
2 Hb_004712_170 0.2005004744 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
3 Hb_004204_050 0.2082961344 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_000152_510 0.2161132653 - - kinase, putative [Ricinus communis]
5 Hb_002631_320 0.2239291565 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
6 Hb_007592_020 0.2305956644 - - acyltransferase, putative [Ricinus communis]
7 Hb_007441_110 0.2471368598 - - PREDICTED: F-box/LRR-repeat protein At3g58900-like [Jatropha curcas]
8 Hb_007403_110 0.2482227072 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
9 Hb_000181_410 0.2503290582 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004724_220 0.2503599377 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
11 Hb_000904_080 0.2534360026 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
12 Hb_000291_030 0.253590197 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
13 Hb_004880_140 0.2566296969 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
14 Hb_001377_360 0.2576262553 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
15 Hb_000318_480 0.2589630979 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
16 Hb_010883_200 0.2616093176 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
17 Hb_018118_040 0.2643700306 - - -
18 Hb_000866_280 0.266234882 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
19 Hb_000307_190 0.2668470472 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
20 Hb_000538_010 0.2675871592 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_025214_090 Hb_025214_090 Hb_004712_170 Hb_004712_170 Hb_025214_090--Hb_004712_170 Hb_004204_050 Hb_004204_050 Hb_025214_090--Hb_004204_050 Hb_000152_510 Hb_000152_510 Hb_025214_090--Hb_000152_510 Hb_002631_320 Hb_002631_320 Hb_025214_090--Hb_002631_320 Hb_007592_020 Hb_007592_020 Hb_025214_090--Hb_007592_020 Hb_007441_110 Hb_007441_110 Hb_025214_090--Hb_007441_110 Hb_007403_110 Hb_007403_110 Hb_004712_170--Hb_007403_110 Hb_004712_170--Hb_004204_050 Hb_001377_360 Hb_001377_360 Hb_004712_170--Hb_001377_360 Hb_004712_170--Hb_002631_320 Hb_000179_240 Hb_000179_240 Hb_004712_170--Hb_000179_240 Hb_004204_050--Hb_002631_320 Hb_004204_050--Hb_007403_110 Hb_000291_030 Hb_000291_030 Hb_004204_050--Hb_000291_030 Hb_004204_050--Hb_001377_360 Hb_000538_010 Hb_000538_010 Hb_000152_510--Hb_000538_010 Hb_000904_130 Hb_000904_130 Hb_000152_510--Hb_000904_130 Hb_004724_220 Hb_004724_220 Hb_000152_510--Hb_004724_220 Hb_000152_510--Hb_007403_110 Hb_001059_080 Hb_001059_080 Hb_000152_510--Hb_001059_080 Hb_031711_010 Hb_031711_010 Hb_000152_510--Hb_031711_010 Hb_002631_320--Hb_000291_030 Hb_004635_030 Hb_004635_030 Hb_002631_320--Hb_004635_030 Hb_002478_040 Hb_002478_040 Hb_002631_320--Hb_002478_040 Hb_002631_320--Hb_001377_360 Hb_000011_050 Hb_000011_050 Hb_002631_320--Hb_000011_050 Hb_032264_080 Hb_032264_080 Hb_007592_020--Hb_032264_080 Hb_007592_020--Hb_000152_510 Hb_000181_410 Hb_000181_410 Hb_007592_020--Hb_000181_410 Hb_005883_070 Hb_005883_070 Hb_007592_020--Hb_005883_070 Hb_008725_060 Hb_008725_060 Hb_007592_020--Hb_008725_060 Hb_001410_020 Hb_001410_020 Hb_007441_110--Hb_001410_020 Hb_000260_180 Hb_000260_180 Hb_007441_110--Hb_000260_180 Hb_006588_210 Hb_006588_210 Hb_007441_110--Hb_006588_210 Hb_000130_240 Hb_000130_240 Hb_007441_110--Hb_000130_240 Hb_021576_110 Hb_021576_110 Hb_007441_110--Hb_021576_110 Hb_000087_060 Hb_000087_060 Hb_007441_110--Hb_000087_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0215213 0.0942584 0.0917856 0.0166676 0.0510752 0.047106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0577556 0.0364331 0.0229944 0

CAGE analysis