Hb_025214_130

Information

Type -
Description -
Location Contig25214: 174314-181116
Sequence    

Annotation

kegg
ID rcu:RCOM_1119070
description hypothetical protein
nr
ID XP_012080637.1
description PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KG47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13747 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26399: 174341-175326 , PASA_asmbl_26401: 176299-178858 , PASA_asmbl_26402: 177001-177281 , PASA_asmbl_26403: 179339-181028
cDNA
(Sanger)
(ID:Location)		 051_I09.ab1: 179339-180918

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025214_130 0.0 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
2 Hb_001153_220 0.0877370496 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
3 Hb_007429_030 0.1010002739 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
4 Hb_064997_010 0.1042650874 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
5 Hb_004414_050 0.1247291887 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_002794_030 0.130316583 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
7 Hb_001959_160 0.1414554495 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_003943_030 0.1416926334 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
9 Hb_003504_020 0.1421725875 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
10 Hb_012573_030 0.1435844246 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000156_100 0.1442139094 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
12 Hb_003018_190 0.146214138 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
13 Hb_000997_400 0.1465650859 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
14 Hb_002290_040 0.1478009394 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000297_200 0.1502179823 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
16 Hb_024952_010 0.1502236372 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
17 Hb_008311_010 0.1502978867 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
18 Hb_000920_240 0.1510839363 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
19 Hb_004128_180 0.151252573 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000377_060 0.1518041807 - - ARF GTPase activator, putative [Ricinus communis]

Gene co-expression network

sample Hb_025214_130 Hb_025214_130 Hb_001153_220 Hb_001153_220 Hb_025214_130--Hb_001153_220 Hb_007429_030 Hb_007429_030 Hb_025214_130--Hb_007429_030 Hb_064997_010 Hb_064997_010 Hb_025214_130--Hb_064997_010 Hb_004414_050 Hb_004414_050 Hb_025214_130--Hb_004414_050 Hb_002794_030 Hb_002794_030 Hb_025214_130--Hb_002794_030 Hb_001959_160 Hb_001959_160 Hb_025214_130--Hb_001959_160 Hb_001153_220--Hb_064997_010 Hb_001153_220--Hb_001959_160 Hb_024952_010 Hb_024952_010 Hb_001153_220--Hb_024952_010 Hb_002290_040 Hb_002290_040 Hb_001153_220--Hb_002290_040 Hb_023292_010 Hb_023292_010 Hb_001153_220--Hb_023292_010 Hb_003943_030 Hb_003943_030 Hb_007429_030--Hb_003943_030 Hb_003504_020 Hb_003504_020 Hb_007429_030--Hb_003504_020 Hb_007429_030--Hb_004414_050 Hb_019654_090 Hb_019654_090 Hb_007429_030--Hb_019654_090 Hb_007429_030--Hb_001959_160 Hb_003018_190 Hb_003018_190 Hb_064997_010--Hb_003018_190 Hb_000836_070 Hb_000836_070 Hb_064997_010--Hb_000836_070 Hb_000997_400 Hb_000997_400 Hb_064997_010--Hb_000997_400 Hb_008311_010 Hb_008311_010 Hb_064997_010--Hb_008311_010 Hb_000125_030 Hb_000125_030 Hb_004414_050--Hb_000125_030 Hb_004410_100 Hb_004410_100 Hb_004414_050--Hb_004410_100 Hb_000019_060 Hb_000019_060 Hb_004414_050--Hb_000019_060 Hb_004128_180 Hb_004128_180 Hb_004414_050--Hb_004128_180 Hb_001159_080 Hb_001159_080 Hb_004414_050--Hb_001159_080 Hb_007229_060 Hb_007229_060 Hb_002794_030--Hb_007229_060 Hb_000156_100 Hb_000156_100 Hb_002794_030--Hb_000156_100 Hb_000671_150 Hb_000671_150 Hb_002794_030--Hb_000671_150 Hb_000983_100 Hb_000983_100 Hb_002794_030--Hb_000983_100 Hb_000196_090 Hb_000196_090 Hb_002794_030--Hb_000196_090 Hb_002527_070 Hb_002527_070 Hb_002794_030--Hb_002527_070 Hb_001959_160--Hb_003943_030 Hb_008085_040 Hb_008085_040 Hb_001959_160--Hb_008085_040 Hb_001959_160--Hb_002290_040 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6906 8.67336 3.9885 6.44112 4.5058 25.7433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.033 28.0389 56.4898 5.32352 2.69405

CAGE analysis