Hb_025236_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig25236: 27277-30526
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11800g
description POPTRDRAFT_669610; hypothetical protein
nr
ID XP_002325140.2
description hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
swissprot
ID Q9ZUG9
description Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1
trembl
ID B9IMF5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11800g PE=4 SV=2
Gene Ontology
ID GO:0046983
description transcription factor bhlh66-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26405: 27333-30761 , PASA_asmbl_26406: 27593-30761
cDNA
(Sanger)
(ID:Location)		 033_H16.ab1: 27331-28098 , 044_M07.ab1: 27333-28196 , 046_L24.ab1: 27333-28222 , 046_N07.ab1: 27333-28198

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025236_020 0.0 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
2 Hb_002343_020 0.1084178509 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
3 Hb_000421_020 0.120357944 - - ascorbate peroxidase [Hevea brasiliensis]
4 Hb_005814_010 0.1205400944 - - ATP binding protein, putative [Ricinus communis]
5 Hb_052434_010 0.1206716376 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
6 Hb_003529_230 0.122330724 transcription factor TF Family: ERF -
7 Hb_000771_070 0.1285725211 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
8 Hb_000027_130 0.1289856453 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
9 Hb_000402_030 0.1410546992 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
10 Hb_002641_050 0.1454499447 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
11 Hb_000008_430 0.1475272614 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
12 Hb_000001_010 0.1503892834 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
13 Hb_002910_010 0.1509794902 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
14 Hb_000752_020 0.1540851909 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
15 Hb_000092_080 0.15499845 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_038742 [Vitis vinifera]
16 Hb_001538_050 0.1553309669 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
17 Hb_005375_070 0.1580163019 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
18 Hb_005649_010 0.1601096704 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
19 Hb_108551_010 0.1614322134 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003680_250 0.1624985444 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_025236_020 Hb_025236_020 Hb_002343_020 Hb_002343_020 Hb_025236_020--Hb_002343_020 Hb_000421_020 Hb_000421_020 Hb_025236_020--Hb_000421_020 Hb_005814_010 Hb_005814_010 Hb_025236_020--Hb_005814_010 Hb_052434_010 Hb_052434_010 Hb_025236_020--Hb_052434_010 Hb_003529_230 Hb_003529_230 Hb_025236_020--Hb_003529_230 Hb_000771_070 Hb_000771_070 Hb_025236_020--Hb_000771_070 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_005649_010 Hb_005649_010 Hb_002343_020--Hb_005649_010 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070 Hb_000008_430 Hb_000008_430 Hb_000421_020--Hb_000008_430 Hb_002375_050 Hb_002375_050 Hb_000421_020--Hb_002375_050 Hb_002910_010 Hb_002910_010 Hb_000421_020--Hb_002910_010 Hb_003589_020 Hb_003589_020 Hb_000421_020--Hb_003589_020 Hb_000421_020--Hb_002343_020 Hb_000495_050 Hb_000495_050 Hb_005814_010--Hb_000495_050 Hb_005814_010--Hb_000771_070 Hb_000031_160 Hb_000031_160 Hb_005814_010--Hb_000031_160 Hb_005814_010--Hb_000402_030 Hb_005814_010--Hb_052434_010 Hb_000552_090 Hb_000552_090 Hb_005814_010--Hb_000552_090 Hb_052434_010--Hb_003529_230 Hb_000359_260 Hb_000359_260 Hb_052434_010--Hb_000359_260 Hb_000001_010 Hb_000001_010 Hb_052434_010--Hb_000001_010 Hb_002107_110 Hb_002107_110 Hb_052434_010--Hb_002107_110 Hb_003529_230--Hb_000771_070 Hb_003529_230--Hb_000402_030 Hb_000752_020 Hb_000752_020 Hb_003529_230--Hb_000752_020 Hb_003529_230--Hb_005814_010 Hb_000027_130 Hb_000027_130 Hb_000771_070--Hb_000027_130 Hb_000771_070--Hb_000752_020 Hb_000771_070--Hb_000402_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.99579 85.4631 57.8242 18.5653 1.72651 1.88285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.20419 1.05225 0.737293 39.6172 15.5675

CAGE analysis