Hb_025236_040

Information

Type -
Description -
Location Contig25236: 52275-52896
Sequence    

Annotation

kegg
ID rcu:RCOM_0700080
description hypothetical protein
nr
ID XP_002523492.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBX3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0700080 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cytochrome c oxidase assembly factor 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26409: 52141-52881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025236_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001951_260 0.0599349397 - - 60S ribosomal protein L32, putative [Ricinus communis]
3 Hb_017259_010 0.0862888086 - - -
4 Hb_000084_290 0.0876001547 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
5 Hb_000621_060 0.0969683562 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
6 Hb_003746_040 0.0977465177 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
7 Hb_000290_020 0.1003592006 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
8 Hb_004447_030 0.1003998194 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
9 Hb_000065_080 0.1024510447 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
10 Hb_001047_100 0.1028748025 - - 40S ribosomal protein S18, putative [Ricinus communis]
11 Hb_001158_220 0.1036529559 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
12 Hb_011828_050 0.1050588321 - - 40S ribosomal protein S23, putative [Ricinus communis]
13 Hb_004032_060 0.105196432 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
14 Hb_000349_060 0.1095011988 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_000457_110 0.1103516581 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
16 Hb_105386_010 0.1133309577 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
17 Hb_070739_010 0.1136464423 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
18 Hb_004944_010 0.1152748368 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
19 Hb_003874_020 0.1175987826 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
20 Hb_171554_090 0.1180509095 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]

Gene co-expression network

sample Hb_025236_040 Hb_025236_040 Hb_001951_260 Hb_001951_260 Hb_025236_040--Hb_001951_260 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_000084_290 Hb_000084_290 Hb_025236_040--Hb_000084_290 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_025236_040--Hb_000290_020 Hb_001951_260--Hb_000290_020 Hb_004032_060 Hb_004032_060 Hb_001951_260--Hb_004032_060 Hb_001951_260--Hb_000084_290 Hb_007558_010 Hb_007558_010 Hb_001951_260--Hb_007558_010 Hb_001047_100 Hb_001047_100 Hb_001951_260--Hb_001047_100 Hb_009838_130 Hb_009838_130 Hb_017259_010--Hb_009838_130 Hb_001158_220 Hb_001158_220 Hb_017259_010--Hb_001158_220 Hb_007643_050 Hb_007643_050 Hb_017259_010--Hb_007643_050 Hb_004447_030 Hb_004447_030 Hb_017259_010--Hb_004447_030 Hb_000529_080 Hb_000529_080 Hb_017259_010--Hb_000529_080 Hb_000742_140 Hb_000742_140 Hb_000084_290--Hb_000742_140 Hb_009767_120 Hb_009767_120 Hb_000084_290--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000084_290--Hb_011828_050 Hb_000349_060 Hb_000349_060 Hb_000084_290--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000084_290--Hb_002983_010 Hb_008406_160 Hb_008406_160 Hb_000621_060--Hb_008406_160 Hb_001009_040 Hb_001009_040 Hb_000621_060--Hb_001009_040 Hb_000065_080 Hb_000065_080 Hb_000621_060--Hb_000065_080 Hb_000258_410 Hb_000258_410 Hb_000621_060--Hb_000258_410 Hb_007632_090 Hb_007632_090 Hb_000621_060--Hb_007632_090 Hb_003746_040--Hb_001047_100 Hb_003746_040--Hb_011828_050 Hb_043302_010 Hb_043302_010 Hb_003746_040--Hb_043302_010 Hb_010128_130 Hb_010128_130 Hb_003746_040--Hb_010128_130 Hb_105386_010 Hb_105386_010 Hb_003746_040--Hb_105386_010 Hb_003746_040--Hb_000290_020 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
96.627 28.622 50.2688 41.0095 99.992 121.192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.5596 102.106 18.1523 24.0711 9.4673

CAGE analysis