Hb_025246_010

Information

Type -
Description -
Location Contig25246: 18478-20613
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26427: 18432-20157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025246_010 0.0 - - -
2 Hb_003057_130 0.0867234714 - - -
3 Hb_003057_050 0.088819363 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
4 Hb_036369_010 0.1002481482 - - -
5 Hb_001248_020 0.1030845762 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
6 Hb_000699_110 0.1046927718 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
7 Hb_000984_190 0.1070369488 - - -
8 Hb_003398_060 0.1115304923 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_017895_050 0.1121146304 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
10 Hb_002518_250 0.1160032083 - - conserved hypothetical protein 10 [Hevea brasiliensis]
11 Hb_004607_140 0.1161065811 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
12 Hb_000175_040 0.1192813382 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
13 Hb_001999_120 0.1211535606 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
14 Hb_000479_180 0.1223163144 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001437_040 0.1263450505 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
16 Hb_012305_060 0.1275552713 - - protein translocase, putative [Ricinus communis]
17 Hb_000261_510 0.1288407719 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]
18 Hb_001623_240 0.1315152285 - - hypothetical protein VITISV_004933 [Vitis vinifera]
19 Hb_004545_160 0.1317560571 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
20 Hb_000163_200 0.1337780129 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]

Gene co-expression network

sample Hb_025246_010 Hb_025246_010 Hb_003057_130 Hb_003057_130 Hb_025246_010--Hb_003057_130 Hb_003057_050 Hb_003057_050 Hb_025246_010--Hb_003057_050 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_000699_110 Hb_000699_110 Hb_025246_010--Hb_000699_110 Hb_000984_190 Hb_000984_190 Hb_025246_010--Hb_000984_190 Hb_000788_120 Hb_000788_120 Hb_003057_130--Hb_000788_120 Hb_000175_040 Hb_000175_040 Hb_003057_130--Hb_000175_040 Hb_012305_060 Hb_012305_060 Hb_003057_130--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_003057_130--Hb_000284_010 Hb_000005_030 Hb_000005_030 Hb_003057_130--Hb_000005_030 Hb_004607_140 Hb_004607_140 Hb_003057_050--Hb_004607_140 Hb_017895_050 Hb_017895_050 Hb_003057_050--Hb_017895_050 Hb_004117_290 Hb_004117_290 Hb_003057_050--Hb_004117_290 Hb_000617_320 Hb_000617_320 Hb_003057_050--Hb_000617_320 Hb_000479_180 Hb_000479_180 Hb_003057_050--Hb_000479_180 Hb_036369_010--Hb_001248_020 Hb_000366_100 Hb_000366_100 Hb_036369_010--Hb_000366_100 Hb_023675_010 Hb_023675_010 Hb_036369_010--Hb_023675_010 Hb_170305_020 Hb_170305_020 Hb_036369_010--Hb_170305_020 Hb_003398_060 Hb_003398_060 Hb_036369_010--Hb_003398_060 Hb_001248_020--Hb_003398_060 Hb_012395_100 Hb_012395_100 Hb_001248_020--Hb_012395_100 Hb_001248_020--Hb_023675_010 Hb_004852_020 Hb_004852_020 Hb_001248_020--Hb_004852_020 Hb_001623_240 Hb_001623_240 Hb_000699_110--Hb_001623_240 Hb_000261_510 Hb_000261_510 Hb_000699_110--Hb_000261_510 Hb_000699_110--Hb_000175_040 Hb_000699_110--Hb_003057_050 Hb_004724_140 Hb_004724_140 Hb_000699_110--Hb_004724_140 Hb_001235_070 Hb_001235_070 Hb_000984_190--Hb_001235_070 Hb_005941_010 Hb_005941_010 Hb_000984_190--Hb_005941_010 Hb_003453_010 Hb_003453_010 Hb_000984_190--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_000984_190--Hb_001437_040 Hb_000984_190--Hb_017895_050 Hb_003086_020 Hb_003086_020 Hb_000984_190--Hb_003086_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.53381 1.2449 0.79085 0.485871 6.02963 9.43334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1838 9.66662 3.35927 2.08575 1.01629

CAGE analysis