Hb_025299_010

Information

Type -
Description -
Location Contig25299: 406-2371
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001941mg
description hypothetical protein
nr
ID KDP39305.1
description hypothetical protein JCGZ_01062 [Jatropha curcas]
swissprot
ID Q8VZK9
description Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=2 SV=1
trembl
ID A0A067L485
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01062 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025299_010 0.0 - - hypothetical protein JCGZ_01062 [Jatropha curcas]
2 Hb_001675_060 0.210629665 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
3 Hb_005016_150 0.2177340673 - - -
4 Hb_019715_020 0.2236994796 - - -
5 Hb_001477_010 0.2281254047 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
6 Hb_004669_040 0.2294674391 - - ATPase inhibitor, putative [Ricinus communis]
7 Hb_004607_120 0.2310235128 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
8 Hb_000342_080 0.2346955339 - - hypothetical protein L484_019524 [Morus notabilis]
9 Hb_001546_050 0.2365336366 - - -
10 Hb_003376_170 0.241312158 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
11 Hb_000210_130 0.2436379256 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
12 Hb_000256_270 0.2468529474 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
13 Hb_079738_010 0.2478483478 - - hypothetical protein CISIN_1g036582mg, partial [Citrus sinensis]
14 Hb_144898_010 0.2484056772 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
15 Hb_000025_310 0.248846924 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001513_020 0.249411795 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
17 Hb_015807_010 0.2517790588 - - hypothetical protein POPTR_0001s44430g [Populus trichocarpa]
18 Hb_000213_060 0.2527093113 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
19 Hb_002639_070 0.2529440683 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
20 Hb_012807_080 0.2531875467 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]

Gene co-expression network

sample Hb_025299_010 Hb_025299_010 Hb_001675_060 Hb_001675_060 Hb_025299_010--Hb_001675_060 Hb_005016_150 Hb_005016_150 Hb_025299_010--Hb_005016_150 Hb_019715_020 Hb_019715_020 Hb_025299_010--Hb_019715_020 Hb_001477_010 Hb_001477_010 Hb_025299_010--Hb_001477_010 Hb_004669_040 Hb_004669_040 Hb_025299_010--Hb_004669_040 Hb_004607_120 Hb_004607_120 Hb_025299_010--Hb_004607_120 Hb_001675_060--Hb_005016_150 Hb_003226_170 Hb_003226_170 Hb_001675_060--Hb_003226_170 Hb_001513_020 Hb_001513_020 Hb_001675_060--Hb_001513_020 Hb_000213_060 Hb_000213_060 Hb_001675_060--Hb_000213_060 Hb_001675_060--Hb_001477_010 Hb_000256_270 Hb_000256_270 Hb_001675_060--Hb_000256_270 Hb_005016_150--Hb_000213_060 Hb_005016_150--Hb_001477_010 Hb_181320_010 Hb_181320_010 Hb_005016_150--Hb_181320_010 Hb_005016_150--Hb_003226_170 Hb_005016_150--Hb_000256_270 Hb_003041_060 Hb_003041_060 Hb_019715_020--Hb_003041_060 Hb_001021_230 Hb_001021_230 Hb_019715_020--Hb_001021_230 Hb_000268_020 Hb_000268_020 Hb_019715_020--Hb_000268_020 Hb_015807_010 Hb_015807_010 Hb_019715_020--Hb_015807_010 Hb_000529_100 Hb_000529_100 Hb_019715_020--Hb_000529_100 Hb_001477_010--Hb_000256_270 Hb_118301_010 Hb_118301_010 Hb_001477_010--Hb_118301_010 Hb_001252_170 Hb_001252_170 Hb_001477_010--Hb_001252_170 Hb_002290_060 Hb_002290_060 Hb_001477_010--Hb_002290_060 Hb_002955_010 Hb_002955_010 Hb_001477_010--Hb_002955_010 Hb_012807_080 Hb_012807_080 Hb_001477_010--Hb_012807_080 Hb_000771_160 Hb_000771_160 Hb_004669_040--Hb_000771_160 Hb_005410_010 Hb_005410_010 Hb_004669_040--Hb_005410_010 Hb_007111_040 Hb_007111_040 Hb_004669_040--Hb_007111_040 Hb_002405_020 Hb_002405_020 Hb_004669_040--Hb_002405_020 Hb_000025_310 Hb_000025_310 Hb_004669_040--Hb_000025_310 Hb_000210_130 Hb_000210_130 Hb_004669_040--Hb_000210_130 Hb_044662_040 Hb_044662_040 Hb_004607_120--Hb_044662_040 Hb_002863_010 Hb_002863_010 Hb_004607_120--Hb_002863_010 Hb_004502_030 Hb_004502_030 Hb_004607_120--Hb_004502_030 Hb_007632_250 Hb_007632_250 Hb_004607_120--Hb_007632_250 Hb_002235_150 Hb_002235_150 Hb_004607_120--Hb_002235_150 Hb_000622_100 Hb_000622_100 Hb_004607_120--Hb_000622_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.316689 0.0154411 0.0121817 0.0356161 0.794252 1.00337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.282581 0.277876 0 0.177745 0.173572

CAGE analysis