Hb_025469_040

Information

Type -
Description -
Location Contig25469: 30847-32439
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12000g
description hypothetical protein
nr
ID XP_012071625.1
description PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
swissprot
ID Q6RY07
description Acidic mammalian chitinase OS=Rattus norvegicus GN=Chia PE=2 SV=1
trembl
ID A0A067L2C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03993 PE=3 SV=1
Gene Ontology
ID GO:0004568
description acidic mammalian chitinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26589: 30915-32345
cDNA
(Sanger)
(ID:Location)		 044_E20.ab1: 30915-31679

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025469_040 0.0 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
2 Hb_131864_020 0.069487551 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
3 Hb_001473_100 0.0722138315 - - chalcone synthase 1 [Jatropha curcas]
4 Hb_000631_130 0.080568353 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
5 Hb_007044_070 0.0902672967 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
6 Hb_000625_130 0.1015354564 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
7 Hb_148914_010 0.1031850268 - - glutathione s-transferase, putative [Ricinus communis]
8 Hb_001936_030 0.1091978114 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
9 Hb_000917_330 0.1109128124 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
10 Hb_001691_060 0.1128469017 - - lipoxygenase, putative [Ricinus communis]
11 Hb_000815_280 0.1190273671 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]
12 Hb_001168_010 0.121428123 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
13 Hb_000038_090 0.1256104468 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
14 Hb_011145_020 0.1285510928 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
15 Hb_142522_030 0.1291540065 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
16 Hb_001775_050 0.1306273238 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
17 Hb_012796_050 0.134510469 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
18 Hb_002232_370 0.1345663219 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
19 Hb_000245_140 0.1348711769 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
20 Hb_004774_060 0.1380679831 - - -

Gene co-expression network

sample Hb_025469_040 Hb_025469_040 Hb_131864_020 Hb_131864_020 Hb_025469_040--Hb_131864_020 Hb_001473_100 Hb_001473_100 Hb_025469_040--Hb_001473_100 Hb_000631_130 Hb_000631_130 Hb_025469_040--Hb_000631_130 Hb_007044_070 Hb_007044_070 Hb_025469_040--Hb_007044_070 Hb_000625_130 Hb_000625_130 Hb_025469_040--Hb_000625_130 Hb_148914_010 Hb_148914_010 Hb_025469_040--Hb_148914_010 Hb_131864_020--Hb_001473_100 Hb_131864_020--Hb_007044_070 Hb_131864_020--Hb_000631_130 Hb_000815_280 Hb_000815_280 Hb_131864_020--Hb_000815_280 Hb_000589_100 Hb_000589_100 Hb_131864_020--Hb_000589_100 Hb_001473_100--Hb_000631_130 Hb_004055_080 Hb_004055_080 Hb_001473_100--Hb_004055_080 Hb_000038_090 Hb_000038_090 Hb_001473_100--Hb_000038_090 Hb_001473_100--Hb_007044_070 Hb_000631_130--Hb_000038_090 Hb_000631_130--Hb_007044_070 Hb_000933_200 Hb_000933_200 Hb_000631_130--Hb_000933_200 Hb_001936_030 Hb_001936_030 Hb_007044_070--Hb_001936_030 Hb_142522_030 Hb_142522_030 Hb_007044_070--Hb_142522_030 Hb_000917_330 Hb_000917_330 Hb_000625_130--Hb_000917_330 Hb_000625_130--Hb_001936_030 Hb_000625_130--Hb_142522_030 Hb_001377_480 Hb_001377_480 Hb_000625_130--Hb_001377_480 Hb_003166_020 Hb_003166_020 Hb_000625_130--Hb_003166_020 Hb_012796_050 Hb_012796_050 Hb_148914_010--Hb_012796_050 Hb_000438_190 Hb_000438_190 Hb_148914_010--Hb_000438_190 Hb_002232_370 Hb_002232_370 Hb_148914_010--Hb_002232_370 Hb_000245_140 Hb_000245_140 Hb_148914_010--Hb_000245_140 Hb_002965_020 Hb_002965_020 Hb_148914_010--Hb_002965_020 Hb_010407_120 Hb_010407_120 Hb_148914_010--Hb_010407_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0171089 0.802748 1.86162 1.02706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0246633 0.0463315 10.8591 0.206359

CAGE analysis