Hb_025477_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig25477: 26240-26905
Sequence    

Annotation

kegg
ID rcu:RCOM_1497440
description Dehydration-responsive element-binding protein 1B, putative
nr
ID XP_012090325.1
description PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
swissprot
ID Q9FJ90
description Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1
trembl
ID A0A067JS16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26160 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf027-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025477_020 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
2 Hb_002922_010 0.0617868242 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
3 Hb_000210_150 0.0935773585 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_003582_020 0.0942088194 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
5 Hb_009707_010 0.0966192185 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
6 Hb_001289_030 0.0984011684 - - syntaxin, plant, putative [Ricinus communis]
7 Hb_001477_080 0.098542705 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
8 Hb_027214_060 0.1006804352 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
9 Hb_010417_120 0.1012651753 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001411_150 0.1042069048 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
11 Hb_035391_010 0.1042844018 - - TMV resistance protein N, putative [Ricinus communis]
12 Hb_073870_020 0.1048780205 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
13 Hb_000227_410 0.1055401139 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
14 Hb_000347_360 0.1069289058 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
15 Hb_007383_050 0.1082411304 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
16 Hb_125201_010 0.1097077898 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
17 Hb_004267_070 0.1099056641 - - latex allene oxide synthase [Hevea brasiliensis]
18 Hb_001168_100 0.1134319085 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
19 Hb_006648_030 0.1143728487 - - Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]
20 Hb_002475_110 0.1157622622 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]

Gene co-expression network

sample Hb_025477_020 Hb_025477_020 Hb_002922_010 Hb_002922_010 Hb_025477_020--Hb_002922_010 Hb_000210_150 Hb_000210_150 Hb_025477_020--Hb_000210_150 Hb_003582_020 Hb_003582_020 Hb_025477_020--Hb_003582_020 Hb_009707_010 Hb_009707_010 Hb_025477_020--Hb_009707_010 Hb_001289_030 Hb_001289_030 Hb_025477_020--Hb_001289_030 Hb_001477_080 Hb_001477_080 Hb_025477_020--Hb_001477_080 Hb_010417_120 Hb_010417_120 Hb_002922_010--Hb_010417_120 Hb_002922_010--Hb_001477_080 Hb_041534_010 Hb_041534_010 Hb_002922_010--Hb_041534_010 Hb_125201_010 Hb_125201_010 Hb_002922_010--Hb_125201_010 Hb_002922_010--Hb_003582_020 Hb_004267_070 Hb_004267_070 Hb_000210_150--Hb_004267_070 Hb_035391_010 Hb_035391_010 Hb_000210_150--Hb_035391_010 Hb_158123_010 Hb_158123_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000316_150 Hb_000316_150 Hb_000210_150--Hb_000316_150 Hb_003582_020--Hb_001289_030 Hb_003582_020--Hb_035391_010 Hb_136027_010 Hb_136027_010 Hb_003582_020--Hb_136027_010 Hb_001411_150 Hb_001411_150 Hb_003582_020--Hb_001411_150 Hb_114932_010 Hb_114932_010 Hb_009707_010--Hb_114932_010 Hb_009707_010--Hb_125201_010 Hb_000338_020 Hb_000338_020 Hb_009707_010--Hb_000338_020 Hb_000086_600 Hb_000086_600 Hb_009707_010--Hb_000086_600 Hb_000904_090 Hb_000904_090 Hb_009707_010--Hb_000904_090 Hb_009683_060 Hb_009683_060 Hb_009707_010--Hb_009683_060 Hb_009683_010 Hb_009683_010 Hb_001289_030--Hb_009683_010 Hb_001289_030--Hb_001411_150 Hb_009189_010 Hb_009189_010 Hb_001289_030--Hb_009189_010 Hb_007383_050 Hb_007383_050 Hb_001289_030--Hb_007383_050 Hb_000529_050 Hb_000529_050 Hb_001477_080--Hb_000529_050 Hb_004242_160 Hb_004242_160 Hb_001477_080--Hb_004242_160 Hb_000313_190 Hb_000313_190 Hb_001477_080--Hb_000313_190 Hb_004586_120 Hb_004586_120 Hb_001477_080--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_001477_080--Hb_000322_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0375143 192.719 28.187 39.9424 0 0.252863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0867702 0.682076 0.846925 4.97897 1.4744

CAGE analysis