Hb_025477_060

Information

Type -
Description -
Location Contig25477: 57941-61450
Sequence    

Annotation

kegg
ID rcu:RCOM_1497600
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012090330.1
description PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
swissprot
ID Q3E9C0
description Calcium-dependent protein kinase 34 OS=Arabidopsis thaliana GN=CPK34 PE=2 SV=1
trembl
ID A0A067JS19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26165 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26605: 57846-61581 , PASA_asmbl_26606: 57896-59140 , PASA_asmbl_26607: 61028-61293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025477_060 0.0 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
2 Hb_000002_440 0.0702521012 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_147737_010 0.0702632413 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
4 Hb_000096_180 0.0703610982 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_000046_450 0.0735222297 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
6 Hb_046615_020 0.0743017482 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
7 Hb_001975_020 0.0764729581 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
8 Hb_000813_100 0.076947039 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
9 Hb_004128_080 0.0775953661 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
10 Hb_000343_210 0.0785363804 - - ran-binding protein, putative [Ricinus communis]
11 Hb_033594_020 0.080332529 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
12 Hb_007885_070 0.0819632434 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
13 Hb_000327_310 0.0823675419 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
14 Hb_027073_060 0.0825594646 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
15 Hb_015026_050 0.0834808337 - - XPA-binding protein, putative [Ricinus communis]
16 Hb_000357_080 0.0842159966 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
17 Hb_001157_180 0.0844153519 - - protein binding protein, putative [Ricinus communis]
18 Hb_033883_060 0.0859018261 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
19 Hb_003656_160 0.0887012802 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
20 Hb_032202_240 0.0889584393 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]

Gene co-expression network

sample Hb_025477_060 Hb_025477_060 Hb_000002_440 Hb_000002_440 Hb_025477_060--Hb_000002_440 Hb_147737_010 Hb_147737_010 Hb_025477_060--Hb_147737_010 Hb_000096_180 Hb_000096_180 Hb_025477_060--Hb_000096_180 Hb_000046_450 Hb_000046_450 Hb_025477_060--Hb_000046_450 Hb_046615_020 Hb_046615_020 Hb_025477_060--Hb_046615_020 Hb_001975_020 Hb_001975_020 Hb_025477_060--Hb_001975_020 Hb_000227_380 Hb_000227_380 Hb_000002_440--Hb_000227_380 Hb_000813_100 Hb_000813_100 Hb_000002_440--Hb_000813_100 Hb_000002_440--Hb_000096_180 Hb_000594_020 Hb_000594_020 Hb_000002_440--Hb_000594_020 Hb_002883_010 Hb_002883_010 Hb_000002_440--Hb_002883_010 Hb_000329_130 Hb_000329_130 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_027073_060 Hb_027073_060 Hb_000096_180--Hb_027073_060 Hb_002291_070 Hb_002291_070 Hb_000096_180--Hb_002291_070 Hb_002043_170 Hb_002043_170 Hb_000096_180--Hb_002043_170 Hb_001437_100 Hb_001437_100 Hb_000096_180--Hb_001437_100 Hb_000699_250 Hb_000699_250 Hb_000046_450--Hb_000699_250 Hb_008714_020 Hb_008714_020 Hb_000046_450--Hb_008714_020 Hb_006816_300 Hb_006816_300 Hb_000046_450--Hb_006816_300 Hb_001019_170 Hb_001019_170 Hb_000046_450--Hb_001019_170 Hb_007849_020 Hb_007849_020 Hb_000046_450--Hb_007849_020 Hb_046615_020--Hb_001975_020 Hb_046615_020--Hb_002043_170 Hb_000230_370 Hb_000230_370 Hb_046615_020--Hb_000230_370 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_046615_020--Hb_000531_090 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5663 33.0765 12.3405 8.85962 41.0612 49.2018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3326 7.42167 18.7561 12.5557 12.9799

CAGE analysis