Hb_025477_070

Information

Type -
Description -
Location Contig25477: 74229-75602
Sequence    

Annotation

kegg
ID cic:CICLE_v10006100mg
description hypothetical protein
nr
ID XP_006421833.1
description hypothetical protein CICLE_v10006100mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4RLI5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006100mg PE=4 SV=1
Gene Ontology
ID GO:0009507
description hypothetical protein CICLE_v10006100mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025477_070 0.0 - - hypothetical protein CICLE_v10006100mg [Citrus clementina]
2 Hb_010931_140 0.1142390068 - - -
3 Hb_000369_120 0.1774243265 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
4 Hb_010577_010 0.1825299642 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
5 Hb_001969_020 0.1837059778 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
6 Hb_007574_070 0.2012757804 - - fatty acid desaturase, putative [Ricinus communis]
7 Hb_004117_120 0.2046170816 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
8 Hb_001489_130 0.2090223325 - - Pectate lyase precursor, putative [Ricinus communis]
9 Hb_000032_070 0.209360157 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
10 Hb_004466_060 0.2098490992 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
11 Hb_003071_070 0.2151666023 - - sucrose synthase 3 [Hevea brasiliensis]
12 Hb_089202_010 0.2162038002 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
13 Hb_000340_520 0.2165176745 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
14 Hb_000683_100 0.2221543679 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
15 Hb_002960_130 0.2223521286 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
16 Hb_017014_010 0.223061628 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
17 Hb_000125_010 0.2234635875 transcription factor TF Family: mTERF -
18 Hb_091349_010 0.2237206497 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
19 Hb_003925_020 0.2256283113 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
20 Hb_000342_160 0.2286365942 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_025477_070 Hb_025477_070 Hb_010931_140 Hb_010931_140 Hb_025477_070--Hb_010931_140 Hb_000369_120 Hb_000369_120 Hb_025477_070--Hb_000369_120 Hb_010577_010 Hb_010577_010 Hb_025477_070--Hb_010577_010 Hb_001969_020 Hb_001969_020 Hb_025477_070--Hb_001969_020 Hb_007574_070 Hb_007574_070 Hb_025477_070--Hb_007574_070 Hb_004117_120 Hb_004117_120 Hb_025477_070--Hb_004117_120 Hb_010931_140--Hb_010577_010 Hb_010931_140--Hb_007574_070 Hb_010931_140--Hb_000369_120 Hb_010931_140--Hb_001969_020 Hb_004466_060 Hb_004466_060 Hb_010931_140--Hb_004466_060 Hb_027760_020 Hb_027760_020 Hb_000369_120--Hb_027760_020 Hb_000369_120--Hb_001969_020 Hb_000223_170 Hb_000223_170 Hb_000369_120--Hb_000223_170 Hb_000240_100 Hb_000240_100 Hb_000369_120--Hb_000240_100 Hb_000369_120--Hb_010577_010 Hb_091349_010 Hb_091349_010 Hb_010577_010--Hb_091349_010 Hb_010577_010--Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_010577_010--Hb_000683_100 Hb_122636_010 Hb_122636_010 Hb_010577_010--Hb_122636_010 Hb_010577_010--Hb_007574_070 Hb_001969_020--Hb_000683_100 Hb_000016_060 Hb_000016_060 Hb_001969_020--Hb_000016_060 Hb_002960_130 Hb_002960_130 Hb_001969_020--Hb_002960_130 Hb_001163_040 Hb_001163_040 Hb_001969_020--Hb_001163_040 Hb_003071_070 Hb_003071_070 Hb_007574_070--Hb_003071_070 Hb_007574_070--Hb_091349_010 Hb_002603_050 Hb_002603_050 Hb_007574_070--Hb_002603_050 Hb_003052_180 Hb_003052_180 Hb_007574_070--Hb_003052_180 Hb_183610_010 Hb_183610_010 Hb_004117_120--Hb_183610_010 Hb_005183_170 Hb_005183_170 Hb_004117_120--Hb_005183_170 Hb_024074_020 Hb_024074_020 Hb_004117_120--Hb_024074_020 Hb_000984_310 Hb_000984_310 Hb_004117_120--Hb_000984_310 Hb_000291_160 Hb_000291_160 Hb_004117_120--Hb_000291_160 Hb_162547_010 Hb_162547_010 Hb_004117_120--Hb_162547_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.848066 0 0.642134 6.38253 0.594751 2.45768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04655 0.822074 2.87126 0.637326 1.14577

CAGE analysis