Hb_025490_030

Information

Type -
Description -
Location Contig25490: 35626-36334
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20850g
description POPTRDRAFT_714634; hypothetical protein
nr
ID XP_012066108.1
description PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025490_030 0.0 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
2 Hb_000021_090 0.0658554333 - - -
3 Hb_009545_040 0.0714145629 - - conserved hypothetical protein [Ricinus communis]
4 Hb_124247_030 0.0726010647 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
5 Hb_004037_010 0.07311814 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
6 Hb_001165_040 0.081086752 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
7 Hb_005066_010 0.081484229 - - FAD-binding domain-containing family protein [Populus trichocarpa]
8 Hb_033865_020 0.0817402183 - - -
9 Hb_000948_040 0.0818052996 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
10 Hb_000120_440 0.0870216553 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000205_290 0.0889310161 - - -
12 Hb_001546_090 0.0900219157 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
13 Hb_001930_060 0.0909118817 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
14 Hb_036291_010 0.0918125092 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
15 Hb_004693_010 0.0927940463 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
16 Hb_005614_040 0.0931504443 - - unnamed protein product [Coffea canephora]
17 Hb_000958_180 0.0931742761 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
18 Hb_166232_010 0.0943279993 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
19 Hb_002757_050 0.0963861016 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
20 Hb_001948_020 0.09958077 - - -

Gene co-expression network

sample Hb_025490_030 Hb_025490_030 Hb_000021_090 Hb_000021_090 Hb_025490_030--Hb_000021_090 Hb_009545_040 Hb_009545_040 Hb_025490_030--Hb_009545_040 Hb_124247_030 Hb_124247_030 Hb_025490_030--Hb_124247_030 Hb_004037_010 Hb_004037_010 Hb_025490_030--Hb_004037_010 Hb_001165_040 Hb_001165_040 Hb_025490_030--Hb_001165_040 Hb_005066_010 Hb_005066_010 Hb_025490_030--Hb_005066_010 Hb_000120_440 Hb_000120_440 Hb_000021_090--Hb_000120_440 Hb_000021_090--Hb_009545_040 Hb_000021_090--Hb_004037_010 Hb_000021_090--Hb_124247_030 Hb_006153_190 Hb_006153_190 Hb_000021_090--Hb_006153_190 Hb_009545_040--Hb_000120_440 Hb_009545_040--Hb_001165_040 Hb_009545_040--Hb_004037_010 Hb_009545_040--Hb_006153_190 Hb_126535_010 Hb_126535_010 Hb_124247_030--Hb_126535_010 Hb_177880_010 Hb_177880_010 Hb_124247_030--Hb_177880_010 Hb_004834_020 Hb_004834_020 Hb_124247_030--Hb_004834_020 Hb_007320_040 Hb_007320_040 Hb_124247_030--Hb_007320_040 Hb_004037_010--Hb_000120_440 Hb_004037_010--Hb_001165_040 Hb_000076_200 Hb_000076_200 Hb_004037_010--Hb_000076_200 Hb_001165_040--Hb_000120_440 Hb_002835_030 Hb_002835_030 Hb_001165_040--Hb_002835_030 Hb_000462_100 Hb_000462_100 Hb_001165_040--Hb_000462_100 Hb_010839_040 Hb_010839_040 Hb_001165_040--Hb_010839_040 Hb_033865_020 Hb_033865_020 Hb_005066_010--Hb_033865_020 Hb_000948_040 Hb_000948_040 Hb_005066_010--Hb_000948_040 Hb_001546_090 Hb_001546_090 Hb_005066_010--Hb_001546_090 Hb_000205_290 Hb_000205_290 Hb_005066_010--Hb_000205_290 Hb_001948_020 Hb_001948_020 Hb_005066_010--Hb_001948_020 Hb_002757_050 Hb_002757_050 Hb_005066_010--Hb_002757_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0338387 0.0322852 0.300224 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.64609 0

CAGE analysis