Hb_025557_010

Information

Type -
Description -
Location Contig25557: 12966-14759
Sequence    

Annotation

kegg
ID pmum:103338558
description pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like
nr
ID XP_012080259.1
description PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
swissprot
ID O49619
description Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1
trembl
ID A0A067K8D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11619 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025557_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
2 Hb_000976_150 0.0803102622 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
3 Hb_001720_050 0.0862733404 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
4 Hb_007364_010 0.0869003383 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
5 Hb_010710_110 0.0907510659 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
6 Hb_003777_330 0.0992915749 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
7 Hb_001584_160 0.099504656 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
8 Hb_000421_260 0.0996348024 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
9 Hb_005839_120 0.1035487528 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_000152_820 0.1044674559 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
11 Hb_010710_010 0.1049224795 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
12 Hb_002810_020 0.1050311283 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
13 Hb_000554_020 0.1065207925 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
14 Hb_000953_010 0.1073968972 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
15 Hb_000358_080 0.1087743957 - - Ribonuclease 3 [Gossypium arboreum]
16 Hb_000803_190 0.1089493628 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_000977_070 0.10903912 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
18 Hb_000386_030 0.1095600526 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
19 Hb_000608_120 0.10997155 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
20 Hb_005237_010 0.1104171879 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]

Gene co-expression network

sample Hb_025557_010 Hb_025557_010 Hb_000976_150 Hb_000976_150 Hb_025557_010--Hb_000976_150 Hb_001720_050 Hb_001720_050 Hb_025557_010--Hb_001720_050 Hb_007364_010 Hb_007364_010 Hb_025557_010--Hb_007364_010 Hb_010710_110 Hb_010710_110 Hb_025557_010--Hb_010710_110 Hb_003777_330 Hb_003777_330 Hb_025557_010--Hb_003777_330 Hb_001584_160 Hb_001584_160 Hb_025557_010--Hb_001584_160 Hb_000953_010 Hb_000953_010 Hb_000976_150--Hb_000953_010 Hb_001318_030 Hb_001318_030 Hb_000976_150--Hb_001318_030 Hb_156850_030 Hb_156850_030 Hb_000976_150--Hb_156850_030 Hb_000976_150--Hb_001584_160 Hb_001817_180 Hb_001817_180 Hb_000976_150--Hb_001817_180 Hb_001720_050--Hb_003777_330 Hb_000421_260 Hb_000421_260 Hb_001720_050--Hb_000421_260 Hb_000418_100 Hb_000418_100 Hb_001720_050--Hb_000418_100 Hb_033642_010 Hb_033642_010 Hb_001720_050--Hb_033642_010 Hb_002890_340 Hb_002890_340 Hb_001720_050--Hb_002890_340 Hb_000152_820 Hb_000152_820 Hb_001720_050--Hb_000152_820 Hb_000977_180 Hb_000977_180 Hb_007364_010--Hb_000977_180 Hb_001789_210 Hb_001789_210 Hb_007364_010--Hb_001789_210 Hb_004934_090 Hb_004934_090 Hb_007364_010--Hb_004934_090 Hb_000703_080 Hb_000703_080 Hb_007364_010--Hb_000703_080 Hb_007364_010--Hb_010710_110 Hb_000009_550 Hb_000009_550 Hb_010710_110--Hb_000009_550 Hb_005307_030 Hb_005307_030 Hb_010710_110--Hb_005307_030 Hb_000787_110 Hb_000787_110 Hb_010710_110--Hb_000787_110 Hb_010710_110--Hb_004934_090 Hb_000923_020 Hb_000923_020 Hb_010710_110--Hb_000923_020 Hb_010710_110--Hb_001720_050 Hb_003777_330--Hb_000923_020 Hb_181235_010 Hb_181235_010 Hb_003777_330--Hb_181235_010 Hb_004195_160 Hb_004195_160 Hb_003777_330--Hb_004195_160 Hb_000224_170 Hb_000224_170 Hb_003777_330--Hb_000224_170 Hb_082609_020 Hb_082609_020 Hb_003777_330--Hb_082609_020 Hb_000386_030 Hb_000386_030 Hb_001584_160--Hb_000386_030 Hb_031042_020 Hb_031042_020 Hb_001584_160--Hb_031042_020 Hb_003750_080 Hb_003750_080 Hb_001584_160--Hb_003750_080 Hb_002986_130 Hb_002986_130 Hb_001584_160--Hb_002986_130 Hb_010175_020 Hb_010175_020 Hb_001584_160--Hb_010175_020 Hb_000413_180 Hb_000413_180 Hb_001584_160--Hb_000413_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04326 0.981811 0.230533 0.0925739 1.40471 1.51008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1211 1.00236 1.3643 0.479072 0.33778

CAGE analysis