Hb_025557_020

Information

Type -
Description -
Location Contig25557: 15264-19028
Sequence    

Annotation

kegg
ID rcu:RCOM_1515030
description Activating signal cointegrator, putative
nr
ID XP_012080260.1
description PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
swissprot
ID Q9QXN3
description Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=2
trembl
ID A0A067K569
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11618 PE=4 SV=1
Gene Ontology
ID GO:0005634
description activating signal cointegrator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26651: 15282-18665 , PASA_asmbl_26652: 15982-18665 , PASA_asmbl_26653: 17820-18119
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025557_020 0.0 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
2 Hb_000318_140 0.0553590288 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
3 Hb_164010_020 0.0601338468 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
4 Hb_000631_150 0.0715786555 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
5 Hb_018663_020 0.0774322614 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
6 Hb_000116_170 0.0774676032 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
7 Hb_001226_180 0.0780200783 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
8 Hb_000176_110 0.0807008967 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
9 Hb_009913_050 0.081413625 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
10 Hb_002942_080 0.0820424648 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
11 Hb_000236_320 0.0852991152 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
12 Hb_003384_030 0.08585012 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
13 Hb_002820_040 0.0875773889 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012305_070 0.0889942855 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000317_440 0.0901886455 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
16 Hb_000684_180 0.0901990248 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
17 Hb_002400_180 0.0908232226 - - conserved hypothetical protein [Ricinus communis]
18 Hb_073171_080 0.0912348441 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
19 Hb_000645_150 0.0914391073 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000540_140 0.0915831367 - - zinc binding dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_025557_020 Hb_025557_020 Hb_000318_140 Hb_000318_140 Hb_025557_020--Hb_000318_140 Hb_164010_020 Hb_164010_020 Hb_025557_020--Hb_164010_020 Hb_000631_150 Hb_000631_150 Hb_025557_020--Hb_000631_150 Hb_018663_020 Hb_018663_020 Hb_025557_020--Hb_018663_020 Hb_000116_170 Hb_000116_170 Hb_025557_020--Hb_000116_170 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180 Hb_002820_040 Hb_002820_040 Hb_000318_140--Hb_002820_040 Hb_000318_140--Hb_018663_020 Hb_000318_140--Hb_000631_150 Hb_000035_400 Hb_000035_400 Hb_000318_140--Hb_000035_400 Hb_009615_110 Hb_009615_110 Hb_000318_140--Hb_009615_110 Hb_164010_020--Hb_000318_140 Hb_005271_070 Hb_005271_070 Hb_164010_020--Hb_005271_070 Hb_164010_020--Hb_009615_110 Hb_009913_050 Hb_009913_050 Hb_164010_020--Hb_009913_050 Hb_000258_410 Hb_000258_410 Hb_164010_020--Hb_000258_410 Hb_000317_440 Hb_000317_440 Hb_000631_150--Hb_000317_440 Hb_000134_360 Hb_000134_360 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_004608_020 Hb_004608_020 Hb_000631_150--Hb_004608_020 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_005914_230 Hb_005914_230 Hb_018663_020--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_018663_020--Hb_003384_030 Hb_018663_020--Hb_001226_180 Hb_001969_040 Hb_001969_040 Hb_018663_020--Hb_001969_040 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_000116_170--Hb_004608_020 Hb_000116_170--Hb_000631_150 Hb_006922_080 Hb_006922_080 Hb_000116_170--Hb_006922_080 Hb_000116_170--Hb_000849_100 Hb_009118_010 Hb_009118_010 Hb_000116_170--Hb_009118_010 Hb_002400_180 Hb_002400_180 Hb_001226_180--Hb_002400_180 Hb_004678_060 Hb_004678_060 Hb_001226_180--Hb_004678_060 Hb_003656_160 Hb_003656_160 Hb_001226_180--Hb_003656_160 Hb_001226_180--Hb_001969_040 Hb_004310_060 Hb_004310_060 Hb_001226_180--Hb_004310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.487 32.0834 22.0369 17.6171 128.784 116.601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.7887 37.1892 28.431 34.7862 22.2777

CAGE analysis