Hb_025557_030

Information

Type -
Description -
Location Contig25557: 21275-23965
Sequence    

Annotation

kegg
ID pmum:103338522
description pentatricopeptide repeat-containing protein At1g74600, chloroplastic
nr
ID XP_012080263.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
swissprot
ID Q9CA56
description Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=3 SV=1
trembl
ID A0A067KG80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11621 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26655: 22639-22935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025557_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
2 Hb_000318_330 0.080687467 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
3 Hb_004607_030 0.0837599717 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
4 Hb_027472_170 0.0933029806 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
5 Hb_000019_130 0.0936338662 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
6 Hb_004375_150 0.096924074 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
7 Hb_011030_020 0.0987702386 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
8 Hb_007747_200 0.0991119645 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
9 Hb_010608_050 0.1004489038 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
10 Hb_000574_350 0.1016531363 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
11 Hb_001969_090 0.107607601 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
12 Hb_000206_240 0.1091301927 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000019_060 0.1091442978 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
14 Hb_001314_020 0.111019915 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
15 Hb_000307_030 0.1110428303 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
16 Hb_001189_050 0.1119809509 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
17 Hb_168319_030 0.112106277 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
18 Hb_003687_240 0.1151255794 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
19 Hb_000002_050 0.1155320335 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
20 Hb_002496_040 0.118107099 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_025557_030 Hb_025557_030 Hb_000318_330 Hb_000318_330 Hb_025557_030--Hb_000318_330 Hb_004607_030 Hb_004607_030 Hb_025557_030--Hb_004607_030 Hb_027472_170 Hb_027472_170 Hb_025557_030--Hb_027472_170 Hb_000019_130 Hb_000019_130 Hb_025557_030--Hb_000019_130 Hb_004375_150 Hb_004375_150 Hb_025557_030--Hb_004375_150 Hb_011030_020 Hb_011030_020 Hb_025557_030--Hb_011030_020 Hb_006824_050 Hb_006824_050 Hb_000318_330--Hb_006824_050 Hb_000318_330--Hb_004607_030 Hb_004846_070 Hb_004846_070 Hb_000318_330--Hb_004846_070 Hb_001969_090 Hb_001969_090 Hb_000318_330--Hb_001969_090 Hb_002878_020 Hb_002878_020 Hb_000318_330--Hb_002878_020 Hb_001959_190 Hb_001959_190 Hb_004607_030--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_000567_120 Hb_000567_120 Hb_004607_030--Hb_000567_120 Hb_010608_050 Hb_010608_050 Hb_004607_030--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_004607_030--Hb_008695_100 Hb_027472_170--Hb_000019_130 Hb_000935_050 Hb_000935_050 Hb_027472_170--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_000007_150 Hb_000007_150 Hb_027472_170--Hb_000007_150 Hb_168319_030 Hb_168319_030 Hb_027472_170--Hb_168319_030 Hb_005686_030 Hb_005686_030 Hb_027472_170--Hb_005686_030 Hb_007747_200 Hb_007747_200 Hb_000019_130--Hb_007747_200 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000019_130--Hb_000007_150 Hb_007075_050 Hb_007075_050 Hb_000019_130--Hb_007075_050 Hb_004375_150--Hb_168319_030 Hb_004375_150--Hb_004607_030 Hb_000366_090 Hb_000366_090 Hb_004375_150--Hb_000366_090 Hb_000009_450 Hb_000009_450 Hb_004375_150--Hb_000009_450 Hb_000033_020 Hb_000033_020 Hb_004375_150--Hb_000033_020 Hb_005162_070 Hb_005162_070 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39942 2.3135 0.391924 1.08353 0.859841 1.89318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63153 3.19679 5.46594 1.70703 0.902007

CAGE analysis