Hb_025557_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig25557: 48071-49585
Sequence    

Annotation

kegg
ID tcc:TCM_013983
description Myb domain protein 30, putative isoform 2
nr
ID XP_007037339.1
description Myb-related protein 306, putative isoform 1 [Theobroma cacao]
swissprot
ID P81392
description Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
trembl
ID A0A061FWD3
description Myb-related protein 306, putative isoform 1 OS=Theobroma cacao GN=TCM_013983 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 306-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26662: 48087-49709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025557_060 0.0 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
2 Hb_018591_020 0.0682464756 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_096224_050 0.0757819498 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
4 Hb_004979_070 0.0759445163 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
5 Hb_007904_110 0.076365652 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
6 Hb_001699_140 0.0764676945 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
7 Hb_119600_030 0.0775310061 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
8 Hb_005054_120 0.0792067981 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
9 Hb_002842_010 0.0798664721 - - sulfate transporter, putative [Ricinus communis]
10 Hb_002852_010 0.0838694415 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_007718_030 0.087313154 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_004835_020 0.0873312163 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
13 Hb_000608_290 0.0888358609 - - thioredoxin f-type, putative [Ricinus communis]
14 Hb_000373_160 0.0907888319 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
15 Hb_002259_090 0.0911097226 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
16 Hb_033363_030 0.0922395614 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
17 Hb_002007_220 0.0929497412 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_002407_090 0.094565519 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
19 Hb_000270_090 0.0951300414 - - nitrate transporter, putative [Ricinus communis]
20 Hb_001115_070 0.0966789331 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]

Gene co-expression network

sample Hb_025557_060 Hb_025557_060 Hb_018591_020 Hb_018591_020 Hb_025557_060--Hb_018591_020 Hb_096224_050 Hb_096224_050 Hb_025557_060--Hb_096224_050 Hb_004979_070 Hb_004979_070 Hb_025557_060--Hb_004979_070 Hb_007904_110 Hb_007904_110 Hb_025557_060--Hb_007904_110 Hb_001699_140 Hb_001699_140 Hb_025557_060--Hb_001699_140 Hb_119600_030 Hb_119600_030 Hb_025557_060--Hb_119600_030 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500 Hb_096224_050--Hb_007904_110 Hb_096224_050--Hb_004979_070 Hb_000644_010 Hb_000644_010 Hb_096224_050--Hb_000644_010 Hb_004979_080 Hb_004979_080 Hb_096224_050--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_096224_050--Hb_000027_110 Hb_033363_030 Hb_033363_030 Hb_096224_050--Hb_033363_030 Hb_004979_070--Hb_007904_110 Hb_004979_070--Hb_004979_080 Hb_004979_070--Hb_119600_030 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_007904_110--Hb_119600_030 Hb_007904_110--Hb_004979_080 Hb_000101_330 Hb_000101_330 Hb_001699_140--Hb_000101_330 Hb_007477_060 Hb_007477_060 Hb_001699_140--Hb_007477_060 Hb_001699_140--Hb_005305_070 Hb_000270_090 Hb_000270_090 Hb_001699_140--Hb_000270_090 Hb_005054_120 Hb_005054_120 Hb_001699_140--Hb_005054_120 Hb_000460_040 Hb_000460_040 Hb_001699_140--Hb_000460_040 Hb_000373_160 Hb_000373_160 Hb_119600_030--Hb_000373_160 Hb_002852_010 Hb_002852_010 Hb_119600_030--Hb_002852_010 Hb_002701_250 Hb_002701_250 Hb_119600_030--Hb_002701_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.538 30.4265 21.9626 0.0175141 0.0365288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0797884 0.0313817 0 1.54586 60.447

CAGE analysis