Hb_025557_080

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig25557: 66622-71191
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025557_080 0.0 transcription factor TF Family: zf-HD -
2 Hb_025557_070 0.0553998504 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
3 Hb_025161_060 0.0798798178 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
4 Hb_000291_240 0.0909546862 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
5 Hb_000188_040 0.0966745809 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
6 Hb_188281_020 0.0995694929 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
7 Hb_002031_020 0.1101950115 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
8 Hb_004449_100 0.1123005057 - - -
9 Hb_000046_390 0.1164539813 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
10 Hb_001454_350 0.1260077705 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
11 Hb_180518_010 0.1277488696 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
12 Hb_006252_070 0.1294230712 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
13 Hb_000243_240 0.1303357133 - - cytochrome P450 family protein [Populus trichocarpa]
14 Hb_007237_060 0.1309399284 - - -
15 Hb_001019_030 0.1328091556 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
16 Hb_105885_010 0.1332643635 - - PREDICTED: uncharacterized protein LOC103441690 [Malus domestica]
17 Hb_002073_160 0.1341738014 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
18 Hb_000638_230 0.1360565679 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_000991_060 0.1374514233 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
20 Hb_000327_350 0.1411717235 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]

Gene co-expression network

sample Hb_025557_080 Hb_025557_080 Hb_025557_070 Hb_025557_070 Hb_025557_080--Hb_025557_070 Hb_025161_060 Hb_025161_060 Hb_025557_080--Hb_025161_060 Hb_000291_240 Hb_000291_240 Hb_025557_080--Hb_000291_240 Hb_000188_040 Hb_000188_040 Hb_025557_080--Hb_000188_040 Hb_188281_020 Hb_188281_020 Hb_025557_080--Hb_188281_020 Hb_002031_020 Hb_002031_020 Hb_025557_080--Hb_002031_020 Hb_025557_070--Hb_025161_060 Hb_025557_070--Hb_188281_020 Hb_000046_390 Hb_000046_390 Hb_025557_070--Hb_000046_390 Hb_025557_070--Hb_000188_040 Hb_005116_040 Hb_005116_040 Hb_025557_070--Hb_005116_040 Hb_025161_060--Hb_000046_390 Hb_000638_230 Hb_000638_230 Hb_025161_060--Hb_000638_230 Hb_025161_060--Hb_000291_240 Hb_002808_010 Hb_002808_010 Hb_025161_060--Hb_002808_010 Hb_000991_060 Hb_000991_060 Hb_000291_240--Hb_000991_060 Hb_001454_350 Hb_001454_350 Hb_000291_240--Hb_001454_350 Hb_000243_240 Hb_000243_240 Hb_000291_240--Hb_000243_240 Hb_145975_010 Hb_145975_010 Hb_000291_240--Hb_145975_010 Hb_001141_430 Hb_001141_430 Hb_000291_240--Hb_001141_430 Hb_000188_040--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000188_040--Hb_180518_010 Hb_000188_040--Hb_001454_350 Hb_005291_020 Hb_005291_020 Hb_000188_040--Hb_005291_020 Hb_000462_120 Hb_000462_120 Hb_000188_040--Hb_000462_120 Hb_006252_070 Hb_006252_070 Hb_000188_040--Hb_006252_070 Hb_188281_020--Hb_002031_020 Hb_003788_030 Hb_003788_030 Hb_188281_020--Hb_003788_030 Hb_000581_010 Hb_000581_010 Hb_188281_020--Hb_000581_010 Hb_000487_350 Hb_000487_350 Hb_188281_020--Hb_000487_350 Hb_002031_020--Hb_000581_010 Hb_002031_020--Hb_000487_350 Hb_002031_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_002031_020--Hb_027577_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.02571 0.397295 54.2155 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.24456 10.5126

CAGE analysis