Hb_025623_020

Information

Type -
Description -
Location Contig25623: 26818-29783
Sequence    

Annotation

kegg
ID rcu:RCOM_1175860
description hypothetical protein
nr
ID XP_012088328.1
description PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25823 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26726: 28942-29230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025623_020 0.0 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
2 Hb_002163_030 0.0932123053 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
3 Hb_000562_090 0.0952322085 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
4 Hb_010695_020 0.0962430647 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
5 Hb_008695_120 0.0967006091 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
6 Hb_002942_160 0.1003393754 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
7 Hb_003641_060 0.1020381387 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
8 Hb_002042_140 0.103590783 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
9 Hb_187739_020 0.1039177236 - - PREDICTED: B2 protein [Jatropha curcas]
10 Hb_010931_080 0.1045048757 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
11 Hb_004888_020 0.1078830957 transcription factor TF Family: TCP PREDICTED: transcription factor TCP7-like [Jatropha curcas]
12 Hb_006951_020 0.1083456966 - - Rop3 [Hevea brasiliensis]
13 Hb_000567_050 0.1103052607 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
14 Hb_002255_030 0.1108094424 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
15 Hb_056196_050 0.1109244605 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
16 Hb_002982_040 0.1113179095 - - mta/sah nucleosidase, putative [Ricinus communis]
17 Hb_005306_100 0.1116382477 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
18 Hb_063716_080 0.1118432569 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
19 Hb_007741_020 0.1120659461 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
20 Hb_003935_030 0.112148135 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_025623_020 Hb_025623_020 Hb_002163_030 Hb_002163_030 Hb_025623_020--Hb_002163_030 Hb_000562_090 Hb_000562_090 Hb_025623_020--Hb_000562_090 Hb_010695_020 Hb_010695_020 Hb_025623_020--Hb_010695_020 Hb_008695_120 Hb_008695_120 Hb_025623_020--Hb_008695_120 Hb_002942_160 Hb_002942_160 Hb_025623_020--Hb_002942_160 Hb_003641_060 Hb_003641_060 Hb_025623_020--Hb_003641_060 Hb_001252_010 Hb_001252_010 Hb_002163_030--Hb_001252_010 Hb_003609_030 Hb_003609_030 Hb_002163_030--Hb_003609_030 Hb_020000_020 Hb_020000_020 Hb_002163_030--Hb_020000_020 Hb_000283_070 Hb_000283_070 Hb_002163_030--Hb_000283_070 Hb_011030_010 Hb_011030_010 Hb_002163_030--Hb_011030_010 Hb_004888_020 Hb_004888_020 Hb_002163_030--Hb_004888_020 Hb_002671_140 Hb_002671_140 Hb_000562_090--Hb_002671_140 Hb_000562_090--Hb_003609_030 Hb_008643_210 Hb_008643_210 Hb_000562_090--Hb_008643_210 Hb_013399_100 Hb_013399_100 Hb_000562_090--Hb_013399_100 Hb_003464_050 Hb_003464_050 Hb_000562_090--Hb_003464_050 Hb_000915_020 Hb_000915_020 Hb_000562_090--Hb_000915_020 Hb_002042_140 Hb_002042_140 Hb_010695_020--Hb_002042_140 Hb_000796_190 Hb_000796_190 Hb_010695_020--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_010695_020--Hb_007558_120 Hb_003299_070 Hb_003299_070 Hb_010695_020--Hb_003299_070 Hb_000160_290 Hb_000160_290 Hb_010695_020--Hb_000160_290 Hb_003935_030 Hb_003935_030 Hb_010695_020--Hb_003935_030 Hb_003581_120 Hb_003581_120 Hb_008695_120--Hb_003581_120 Hb_031091_010 Hb_031091_010 Hb_008695_120--Hb_031091_010 Hb_000322_100 Hb_000322_100 Hb_008695_120--Hb_000322_100 Hb_001019_170 Hb_001019_170 Hb_008695_120--Hb_001019_170 Hb_002400_180 Hb_002400_180 Hb_008695_120--Hb_002400_180 Hb_008695_120--Hb_002942_160 Hb_010931_080 Hb_010931_080 Hb_002942_160--Hb_010931_080 Hb_002044_060 Hb_002044_060 Hb_002942_160--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_002942_160--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_002942_160--Hb_000789_080 Hb_000364_080 Hb_000364_080 Hb_002942_160--Hb_000364_080 Hb_063716_080 Hb_063716_080 Hb_003641_060--Hb_063716_080 Hb_000785_080 Hb_000785_080 Hb_003641_060--Hb_000785_080 Hb_004881_020 Hb_004881_020 Hb_003641_060--Hb_004881_020 Hb_002255_030 Hb_002255_030 Hb_003641_060--Hb_002255_030 Hb_010931_040 Hb_010931_040 Hb_003641_060--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_003641_060--Hb_187739_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1146 26.7335 11.3788 13.6866 19.1289 39.8585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.9606 11.7657 12.7107 10.0236 10.8434

CAGE analysis