Hb_025645_010

Information

Type -
Description -
Location Contig25645: 6360-19369
Sequence    

Annotation

kegg
ID vvi:100261458
description proteasome subunit beta type-5
nr
ID XP_012085655.1
description PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
swissprot
ID O24361
description Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
trembl
ID A0A067JVG8
description Proteasome subunit beta type OS=Jatropha curcas GN=JCGZ_17941 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26727: 6594-7385 , PASA_asmbl_26728: 17622-17939
cDNA
(Sanger)
(ID:Location)		 047_E19.ab1: 6667-18734 , 052_A17.ab1: 6667-18739

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025645_010 0.0 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
2 Hb_001662_070 0.0518172543 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
3 Hb_000771_120 0.0608145353 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
4 Hb_000787_050 0.0638295641 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
5 Hb_003092_040 0.0652769564 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
6 Hb_001579_030 0.0666152247 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
7 Hb_007477_070 0.0674096362 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
8 Hb_003078_040 0.0682486912 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
9 Hb_001305_010 0.0685351578 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
10 Hb_000521_320 0.0689877465 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
11 Hb_028995_040 0.069955156 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
12 Hb_000059_330 0.0700760784 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
13 Hb_004116_190 0.0713210025 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
14 Hb_007951_060 0.0729620267 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
15 Hb_000327_120 0.0730325784 - - FGFR1 oncogene partner, putative [Ricinus communis]
16 Hb_003417_020 0.0731584027 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
17 Hb_003126_050 0.0744198516 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
18 Hb_001534_120 0.0757482819 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
19 Hb_000302_270 0.0759386456 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
20 Hb_000815_320 0.0761513814 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_025645_010 Hb_025645_010 Hb_001662_070 Hb_001662_070 Hb_025645_010--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_025645_010--Hb_000771_120 Hb_000787_050 Hb_000787_050 Hb_025645_010--Hb_000787_050 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_001662_070--Hb_000787_050 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_000302_270 Hb_000302_270 Hb_000771_120--Hb_000302_270 Hb_003747_200 Hb_003747_200 Hb_000771_120--Hb_003747_200 Hb_000771_120--Hb_007477_070 Hb_001404_100 Hb_001404_100 Hb_000771_120--Hb_001404_100 Hb_028995_040 Hb_028995_040 Hb_000771_120--Hb_028995_040 Hb_002835_240 Hb_002835_240 Hb_000787_050--Hb_002835_240 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_007416_280 Hb_007416_280 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_001579_030--Hb_000347_540 Hb_001579_030--Hb_001662_070 Hb_001579_030--Hb_000815_320 Hb_001579_030--Hb_000787_050 Hb_000403_060 Hb_000403_060 Hb_001579_030--Hb_000403_060 Hb_001534_120 Hb_001534_120 Hb_007477_070--Hb_001534_120 Hb_001512_060 Hb_001512_060 Hb_007477_070--Hb_001512_060 Hb_007477_070--Hb_001662_070 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.716 61.5531 87.9912 74.3482 110.942 93.2221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.44 144.12 121.959 69.6664 42.3632

CAGE analysis