Hb_025645_020

Information

Type -
Description -
Location Contig25645: 21854-26233
Sequence    

Annotation

kegg
ID rcu:RCOM_1080850
description protein with unknown function (EC:1.3.1.74)
nr
ID XP_012085656.1
description PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
swissprot
ID Q9C9N5
description Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=2 SV=1
trembl
ID A0A067K4R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17942 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable inactive leucine-rich repeat receptor-like protein kinase at1g66830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26730: 21855-22774 , PASA_asmbl_26731: 22812-26201 , PASA_asmbl_26732: 24191-24585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025645_020 0.0 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
2 Hb_003177_040 0.1183661526 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_000176_080 0.1249346829 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
4 Hb_000108_180 0.1315745517 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
5 Hb_150486_010 0.139236519 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
6 Hb_003623_040 0.1396733299 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
7 Hb_001789_100 0.1491141962 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000193_210 0.1504168122 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
9 Hb_000251_120 0.1621660902 - - O-acetyltransferase, putative [Ricinus communis]
10 Hb_001001_070 0.1631559392 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
11 Hb_002894_080 0.1632819017 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001711_080 0.163464747 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
13 Hb_005183_130 0.1638130493 - - glycogenin, putative [Ricinus communis]
14 Hb_001541_060 0.1691887296 - - conserved hypothetical protein [Ricinus communis]
15 Hb_030565_050 0.1703914869 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
16 Hb_003086_030 0.1732105265 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
17 Hb_001584_280 0.1783587549 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
18 Hb_001214_040 0.1790605821 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
19 Hb_000922_400 0.1813811199 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
20 Hb_008461_060 0.1831387242 - - hypothetical protein JCGZ_17379 [Jatropha curcas]

Gene co-expression network

sample Hb_025645_020 Hb_025645_020 Hb_003177_040 Hb_003177_040 Hb_025645_020--Hb_003177_040 Hb_000176_080 Hb_000176_080 Hb_025645_020--Hb_000176_080 Hb_000108_180 Hb_000108_180 Hb_025645_020--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_025645_020--Hb_150486_010 Hb_003623_040 Hb_003623_040 Hb_025645_020--Hb_003623_040 Hb_001789_100 Hb_001789_100 Hb_025645_020--Hb_001789_100 Hb_003177_040--Hb_000108_180 Hb_001001_070 Hb_001001_070 Hb_003177_040--Hb_001001_070 Hb_000236_290 Hb_000236_290 Hb_003177_040--Hb_000236_290 Hb_008461_060 Hb_008461_060 Hb_003177_040--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_003177_040--Hb_001699_080 Hb_000251_120 Hb_000251_120 Hb_003177_040--Hb_000251_120 Hb_000176_080--Hb_003623_040 Hb_005183_130 Hb_005183_130 Hb_000176_080--Hb_005183_130 Hb_000176_080--Hb_000108_180 Hb_000030_130 Hb_000030_130 Hb_000176_080--Hb_000030_130 Hb_000176_080--Hb_000251_120 Hb_000108_180--Hb_000251_120 Hb_000108_180--Hb_001001_070 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000108_180--Hb_005183_130 Hb_000165_020 Hb_000165_020 Hb_150486_010--Hb_000165_020 Hb_150486_010--Hb_001541_060 Hb_150486_010--Hb_000108_180 Hb_000236_230 Hb_000236_230 Hb_150486_010--Hb_000236_230 Hb_001366_110 Hb_001366_110 Hb_150486_010--Hb_001366_110 Hb_003623_040--Hb_005183_130 Hb_030565_050 Hb_030565_050 Hb_003623_040--Hb_030565_050 Hb_003554_040 Hb_003554_040 Hb_003623_040--Hb_003554_040 Hb_003623_040--Hb_000108_180 Hb_019516_060 Hb_019516_060 Hb_001789_100--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_001789_100--Hb_006750_010 Hb_003462_040 Hb_003462_040 Hb_001789_100--Hb_003462_040 Hb_001789_100--Hb_001001_070 Hb_003086_030 Hb_003086_030 Hb_001789_100--Hb_003086_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15029 3.0165 5.5996 32.8291 2.22875 3.24301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.3686 0.201776 0.28901 0.570542 18.4786

CAGE analysis