Hb_025645_030

Information

Type -
Description -
Location Contig25645: 27130-31848
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26731: 22812-26201 , PASA_asmbl_26733: 26884-31018 , PASA_asmbl_26734: 28481-28601 , PASA_asmbl_26735: 29932-30184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025645_030 0.0 - - -
2 Hb_023344_050 0.1020683035 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
3 Hb_004162_180 0.1204508175 - - zinc finger protein, putative [Ricinus communis]
4 Hb_001225_010 0.1275114421 - - unnamed protein product [Coffea canephora]
5 Hb_000110_170 0.1298684907 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001172_100 0.1342700456 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
7 Hb_006420_030 0.1390641919 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
8 Hb_010402_050 0.1406390402 - - -
9 Hb_000178_120 0.1438620521 - - PREDICTED: histone H2B [Jatropha curcas]
10 Hb_007218_150 0.1470666874 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
11 Hb_116420_020 0.1478599911 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
12 Hb_003581_220 0.1483825813 - - unnamed protein product [Vitis vinifera]
13 Hb_062135_020 0.1488487747 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
14 Hb_003540_200 0.1531626408 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
15 Hb_005278_040 0.1532046916 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
16 Hb_083380_010 0.1540351227 - - -
17 Hb_001766_030 0.1577277209 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
18 Hb_000976_250 0.1577399793 - - -
19 Hb_000167_030 0.1580549021 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
20 Hb_003020_330 0.1583467777 - - hypothetical protein B456_010G173100 [Gossypium raimondii]

Gene co-expression network

sample Hb_025645_030 Hb_025645_030 Hb_023344_050 Hb_023344_050 Hb_025645_030--Hb_023344_050 Hb_004162_180 Hb_004162_180 Hb_025645_030--Hb_004162_180 Hb_001225_010 Hb_001225_010 Hb_025645_030--Hb_001225_010 Hb_000110_170 Hb_000110_170 Hb_025645_030--Hb_000110_170 Hb_001172_100 Hb_001172_100 Hb_025645_030--Hb_001172_100 Hb_006420_030 Hb_006420_030 Hb_025645_030--Hb_006420_030 Hb_000928_130 Hb_000928_130 Hb_023344_050--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_023344_050--Hb_002026_120 Hb_005278_040 Hb_005278_040 Hb_023344_050--Hb_005278_040 Hb_001240_020 Hb_001240_020 Hb_023344_050--Hb_001240_020 Hb_000056_250 Hb_000056_250 Hb_023344_050--Hb_000056_250 Hb_001766_030 Hb_001766_030 Hb_004162_180--Hb_001766_030 Hb_004162_180--Hb_000110_170 Hb_003777_040 Hb_003777_040 Hb_004162_180--Hb_003777_040 Hb_004162_180--Hb_001225_010 Hb_012053_010 Hb_012053_010 Hb_004162_180--Hb_012053_010 Hb_001225_010--Hb_001172_100 Hb_003020_330 Hb_003020_330 Hb_001225_010--Hb_003020_330 Hb_001225_010--Hb_000110_170 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001449_090 Hb_001449_090 Hb_001225_010--Hb_001449_090 Hb_000878_020 Hb_000878_020 Hb_001225_010--Hb_000878_020 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_138585_040 Hb_138585_040 Hb_001172_100--Hb_138585_040 Hb_000384_120 Hb_000384_120 Hb_001172_100--Hb_000384_120 Hb_002324_010 Hb_002324_010 Hb_001172_100--Hb_002324_010 Hb_005045_070 Hb_005045_070 Hb_001172_100--Hb_005045_070 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_000000_470 Hb_000000_470 Hb_006420_030--Hb_000000_470 Hb_007218_150 Hb_007218_150 Hb_006420_030--Hb_007218_150 Hb_000069_660 Hb_000069_660 Hb_006420_030--Hb_000069_660 Hb_003581_220 Hb_003581_220 Hb_006420_030--Hb_003581_220 Hb_006420_030--Hb_001225_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.875607 0.41995 0.976001 4.99039 0.626868 0.760205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.29806 16.8442 9.63771 1.92281 2.60138

CAGE analysis