Hb_025668_010

Information

Type -
Description -
Location Contig25668: 31973-42957
Sequence    

Annotation

kegg
ID bvg:104901736
description uncharacterized LOC104901736
nr
ID CDP15641.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068V4R0
description Coffea canephora DH200=94 genomic scaffold, scaffold_102 OS=Coffea canephora GN=GSCOC_T00015572001 PE=4 SV=1
Gene Ontology
ID GO:0016757
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26737: 32722-32843 , PASA_asmbl_26738: 32030-42468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025668_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_023313_040 0.0622837162 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
3 Hb_001002_060 0.0640803849 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
4 Hb_004096_060 0.0735853204 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
5 Hb_005730_010 0.0744312142 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
6 Hb_002942_210 0.0744365508 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
7 Hb_000261_210 0.0760334188 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_000702_090 0.0764057909 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
9 Hb_000847_080 0.0779409973 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
10 Hb_002326_110 0.0779978861 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
11 Hb_001931_030 0.0811318521 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
12 Hb_002326_040 0.0812108407 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
13 Hb_000085_170 0.0817421888 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
14 Hb_020141_040 0.0824009593 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
15 Hb_002811_270 0.083917753 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
16 Hb_000610_040 0.0847004398 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
17 Hb_002473_050 0.0872371458 - - catalytic, putative [Ricinus communis]
18 Hb_000963_040 0.0875114998 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
19 Hb_007483_070 0.0887897484 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
20 Hb_000954_010 0.0888990418 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]

Gene co-expression network

sample Hb_025668_010 Hb_025668_010 Hb_023313_040 Hb_023313_040 Hb_025668_010--Hb_023313_040 Hb_001002_060 Hb_001002_060 Hb_025668_010--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_025668_010--Hb_004096_060 Hb_005730_010 Hb_005730_010 Hb_025668_010--Hb_005730_010 Hb_002942_210 Hb_002942_210 Hb_025668_010--Hb_002942_210 Hb_000261_210 Hb_000261_210 Hb_025668_010--Hb_000261_210 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_000702_090 Hb_000702_090 Hb_023313_040--Hb_000702_090 Hb_023313_040--Hb_001002_060 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_001002_060--Hb_000261_210 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010 Hb_004032_370 Hb_004032_370 Hb_004096_060--Hb_004032_370 Hb_033642_040 Hb_033642_040 Hb_004096_060--Hb_033642_040 Hb_000724_020 Hb_000724_020 Hb_004096_060--Hb_000724_020 Hb_004096_060--Hb_001002_060 Hb_002326_110 Hb_002326_110 Hb_004096_060--Hb_002326_110 Hb_005730_010--Hb_023313_040 Hb_000958_080 Hb_000958_080 Hb_005730_010--Hb_000958_080 Hb_004096_160 Hb_004096_160 Hb_005730_010--Hb_004096_160 Hb_005730_010--Hb_000702_090 Hb_007413_040 Hb_007413_040 Hb_005730_010--Hb_007413_040 Hb_002014_040 Hb_002014_040 Hb_002942_210--Hb_002014_040 Hb_139002_010 Hb_139002_010 Hb_002942_210--Hb_139002_010 Hb_008921_010 Hb_008921_010 Hb_002942_210--Hb_008921_010 Hb_000847_080 Hb_000847_080 Hb_002942_210--Hb_000847_080 Hb_001931_030 Hb_001931_030 Hb_002942_210--Hb_001931_030 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.82335 10.0462 19.6456 16.9015 13.0339 7.02879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.92774 5.62347 6.64312 10.5462 11.6561

CAGE analysis