Hb_025668_020

Information

Type -
Description -
Location Contig25668: 49611-50208
Sequence    

Annotation

kegg
ID rcu:RCOM_1703520
description hypothetical protein
nr
ID XP_002518232.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RWW3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1703520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26740: 49621-49744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025668_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007676_060 0.1378778281 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
3 Hb_000751_070 0.1401169192 - - -
4 Hb_000567_150 0.145553379 - - cysteine protease, putative [Ricinus communis]
5 Hb_170878_060 0.1505777972 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_001519_240 0.1533676473 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_003992_220 0.1537215565 - - s-receptor kinase, putative [Ricinus communis]
8 Hb_001288_050 0.1539219687 - - -
9 Hb_000137_060 0.1550949599 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
10 Hb_001597_090 0.1574468039 - - -
11 Hb_000751_060 0.1626098879 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
12 Hb_000120_880 0.1635333206 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
13 Hb_146930_010 0.1655460792 - - -
14 Hb_001963_110 0.1677823622 - - -
15 Hb_135554_010 0.169743674 - - Insulin-degrading enzyme, putative [Ricinus communis]
16 Hb_001971_050 0.1703330101 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_060152_010 0.1708556014 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
18 Hb_000117_150 0.1731811305 - - hypothetical protein RCOM_0079810 [Ricinus communis]
19 Hb_172939_010 0.1740977584 - - unknown [Picea sitchensis]
20 Hb_002217_390 0.1759985456 - - PREDICTED: galactokinase [Jatropha curcas]

Gene co-expression network

sample Hb_025668_020 Hb_025668_020 Hb_007676_060 Hb_007676_060 Hb_025668_020--Hb_007676_060 Hb_000751_070 Hb_000751_070 Hb_025668_020--Hb_000751_070 Hb_000567_150 Hb_000567_150 Hb_025668_020--Hb_000567_150 Hb_170878_060 Hb_170878_060 Hb_025668_020--Hb_170878_060 Hb_001519_240 Hb_001519_240 Hb_025668_020--Hb_001519_240 Hb_003992_220 Hb_003992_220 Hb_025668_020--Hb_003992_220 Hb_001597_090 Hb_001597_090 Hb_007676_060--Hb_001597_090 Hb_007676_060--Hb_170878_060 Hb_146930_010 Hb_146930_010 Hb_007676_060--Hb_146930_010 Hb_000675_040 Hb_000675_040 Hb_007676_060--Hb_000675_040 Hb_000169_100 Hb_000169_100 Hb_007676_060--Hb_000169_100 Hb_001288_050 Hb_001288_050 Hb_007676_060--Hb_001288_050 Hb_000751_070--Hb_000567_150 Hb_000751_070--Hb_146930_010 Hb_060152_010 Hb_060152_010 Hb_000751_070--Hb_060152_010 Hb_000645_250 Hb_000645_250 Hb_000751_070--Hb_000645_250 Hb_000751_060 Hb_000751_060 Hb_000751_070--Hb_000751_060 Hb_000751_070--Hb_001288_050 Hb_000567_150--Hb_001288_050 Hb_110737_010 Hb_110737_010 Hb_000567_150--Hb_110737_010 Hb_001005_040 Hb_001005_040 Hb_000567_150--Hb_001005_040 Hb_001109_170 Hb_001109_170 Hb_000567_150--Hb_001109_170 Hb_000567_150--Hb_060152_010 Hb_170878_060--Hb_003992_220 Hb_001607_070 Hb_001607_070 Hb_170878_060--Hb_001607_070 Hb_038833_010 Hb_038833_010 Hb_170878_060--Hb_038833_010 Hb_002308_060 Hb_002308_060 Hb_170878_060--Hb_002308_060 Hb_000597_080 Hb_000597_080 Hb_170878_060--Hb_000597_080 Hb_135554_010 Hb_135554_010 Hb_001519_240--Hb_135554_010 Hb_007382_070 Hb_007382_070 Hb_001519_240--Hb_007382_070 Hb_000465_180 Hb_000465_180 Hb_001519_240--Hb_000465_180 Hb_033622_020 Hb_033622_020 Hb_001519_240--Hb_033622_020 Hb_006970_100 Hb_006970_100 Hb_001519_240--Hb_006970_100 Hb_006651_010 Hb_006651_010 Hb_001519_240--Hb_006651_010 Hb_167211_010 Hb_167211_010 Hb_003992_220--Hb_167211_010 Hb_001778_040 Hb_001778_040 Hb_003992_220--Hb_001778_040 Hb_003992_220--Hb_002308_060 Hb_001109_130 Hb_001109_130 Hb_003992_220--Hb_001109_130 Hb_001963_110 Hb_001963_110 Hb_003992_220--Hb_001963_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.619256 0.732964 1.80766 0.0874286 0.21766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.47703 4.08291

CAGE analysis