Hb_025668_030

Information

Type -
Description -
Location Contig25668: 50443-53827
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07600g
description POPTRDRAFT_762273; hypothetical protein
nr
ID XP_012084542.1
description PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
swissprot
ID Q9SW00
description Oxysterol-binding protein-related protein 4B OS=Arabidopsis thaliana GN=ORP4B PE=2 SV=2
trembl
ID A0A067JU81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19813 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26742: 51661-51761 , PASA_asmbl_26743: 52777-56970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025668_030 0.0 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
2 Hb_004449_090 0.1779556404 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
3 Hb_145603_010 0.1780075702 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_000028_580 0.1820189848 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
5 Hb_002097_080 0.1848267247 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
6 Hb_000979_160 0.1911162214 - - hypothetical protein RCOM_0629030 [Ricinus communis]
7 Hb_001976_020 0.1945608247 - - conserved hypothetical protein [Ricinus communis]
8 Hb_106136_010 0.1953943902 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_098795_030 0.1978706795 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
10 Hb_072398_010 0.2039492428 - - pepsin A, putative [Ricinus communis]
11 Hb_004409_030 0.2044116859 - - Glutamine synthetase 1,4 [Theobroma cacao]
12 Hb_000362_050 0.205462697 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
13 Hb_002685_220 0.207207388 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
14 Hb_186495_010 0.2076287976 - - Phosphoprotein phosphatase [Theobroma cacao]
15 Hb_072153_010 0.2093926157 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
16 Hb_090361_010 0.2102123394 - - amino acid transporter, putative [Ricinus communis]
17 Hb_160405_010 0.2114415557 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_002920_010 0.2122726503 - - PREDICTED: sulfiredoxin, chloroplastic/mitochondrial [Populus euphratica]
19 Hb_014497_040 0.2148828461 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
20 Hb_001016_040 0.2154824407 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_025668_030 Hb_025668_030 Hb_004449_090 Hb_004449_090 Hb_025668_030--Hb_004449_090 Hb_145603_010 Hb_145603_010 Hb_025668_030--Hb_145603_010 Hb_000028_580 Hb_000028_580 Hb_025668_030--Hb_000028_580 Hb_002097_080 Hb_002097_080 Hb_025668_030--Hb_002097_080 Hb_000979_160 Hb_000979_160 Hb_025668_030--Hb_000979_160 Hb_001976_020 Hb_001976_020 Hb_025668_030--Hb_001976_020 Hb_160405_010 Hb_160405_010 Hb_004449_090--Hb_160405_010 Hb_030565_050 Hb_030565_050 Hb_004449_090--Hb_030565_050 Hb_004449_090--Hb_000028_580 Hb_000300_230 Hb_000300_230 Hb_004449_090--Hb_000300_230 Hb_002289_150 Hb_002289_150 Hb_004449_090--Hb_002289_150 Hb_011828_010 Hb_011828_010 Hb_004449_090--Hb_011828_010 Hb_090361_010 Hb_090361_010 Hb_145603_010--Hb_090361_010 Hb_000256_220 Hb_000256_220 Hb_145603_010--Hb_000256_220 Hb_009222_080 Hb_009222_080 Hb_145603_010--Hb_009222_080 Hb_000245_100 Hb_000245_100 Hb_145603_010--Hb_000245_100 Hb_006185_040 Hb_006185_040 Hb_145603_010--Hb_006185_040 Hb_000270_750 Hb_000270_750 Hb_145603_010--Hb_000270_750 Hb_000028_550 Hb_000028_550 Hb_000028_580--Hb_000028_550 Hb_000028_580--Hb_002097_080 Hb_000479_060 Hb_000479_060 Hb_000028_580--Hb_000479_060 Hb_154038_040 Hb_154038_040 Hb_000028_580--Hb_154038_040 Hb_135720_010 Hb_135720_010 Hb_000028_580--Hb_135720_010 Hb_002685_220 Hb_002685_220 Hb_002097_080--Hb_002685_220 Hb_002097_080--Hb_001976_020 Hb_014361_040 Hb_014361_040 Hb_002097_080--Hb_014361_040 Hb_098795_030 Hb_098795_030 Hb_002097_080--Hb_098795_030 Hb_002685_160 Hb_002685_160 Hb_002097_080--Hb_002685_160 Hb_000979_160--Hb_001976_020 Hb_000959_120 Hb_000959_120 Hb_000979_160--Hb_000959_120 Hb_007027_010 Hb_007027_010 Hb_000979_160--Hb_007027_010 Hb_000979_160--Hb_002097_080 Hb_001247_270 Hb_001247_270 Hb_000979_160--Hb_001247_270 Hb_003006_080 Hb_003006_080 Hb_000979_160--Hb_003006_080 Hb_001976_020--Hb_098795_030 Hb_001976_020--Hb_002685_220 Hb_001976_020--Hb_000959_120 Hb_007590_100 Hb_007590_100 Hb_001976_020--Hb_007590_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.716681 0.147943 1.63743 0.121605 0.296622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0403292 0.0317237 0 0.457452 0.656721

CAGE analysis