Hb_025669_020

Information

Type -
Description -
Location Contig25669: 8787-13882
Sequence    

Annotation

kegg
ID rcu:RCOM_0903630
description hypothetical protein
nr
ID XP_002518435.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXG6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903630 PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26744: 8899-9056 , PASA_asmbl_26745: 12565-13029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025669_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001083_030 0.0794644921 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
3 Hb_003018_060 0.0846582401 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
4 Hb_000640_220 0.0857290061 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
5 Hb_000365_140 0.0866350302 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
6 Hb_000032_490 0.0870620014 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
7 Hb_000832_090 0.0890191059 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
8 Hb_000002_490 0.0916029981 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
9 Hb_021422_010 0.0923948622 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
10 Hb_003124_220 0.0981265833 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
11 Hb_102129_070 0.101007304 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
12 Hb_000787_090 0.101483703 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
13 Hb_018790_070 0.1033756709 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
14 Hb_001541_260 0.1050549066 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
15 Hb_000933_020 0.1055261007 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001040_040 0.1055261029 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
17 Hb_006623_020 0.1057962121 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
18 Hb_002351_020 0.1067626849 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
19 Hb_131646_010 0.1073880163 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_000718_070 0.1074803387 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_025669_020 Hb_025669_020 Hb_001083_030 Hb_001083_030 Hb_025669_020--Hb_001083_030 Hb_003018_060 Hb_003018_060 Hb_025669_020--Hb_003018_060 Hb_000640_220 Hb_000640_220 Hb_025669_020--Hb_000640_220 Hb_000365_140 Hb_000365_140 Hb_025669_020--Hb_000365_140 Hb_000032_490 Hb_000032_490 Hb_025669_020--Hb_000032_490 Hb_000832_090 Hb_000832_090 Hb_025669_020--Hb_000832_090 Hb_102129_070 Hb_102129_070 Hb_001083_030--Hb_102129_070 Hb_000946_120 Hb_000946_120 Hb_001083_030--Hb_000946_120 Hb_001083_030--Hb_000032_490 Hb_001083_030--Hb_000365_140 Hb_000107_530 Hb_000107_530 Hb_001083_030--Hb_000107_530 Hb_021422_010 Hb_021422_010 Hb_003018_060--Hb_021422_010 Hb_006960_050 Hb_006960_050 Hb_003018_060--Hb_006960_050 Hb_006623_020 Hb_006623_020 Hb_003018_060--Hb_006623_020 Hb_106552_050 Hb_106552_050 Hb_003018_060--Hb_106552_050 Hb_003018_060--Hb_000640_220 Hb_006620_020 Hb_006620_020 Hb_003018_060--Hb_006620_020 Hb_000640_220--Hb_021422_010 Hb_002477_130 Hb_002477_130 Hb_000640_220--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_000640_220--Hb_000365_140 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100 Hb_000365_140--Hb_002477_130 Hb_000365_140--Hb_000946_120 Hb_000365_140--Hb_000032_490 Hb_000422_140 Hb_000422_140 Hb_000365_140--Hb_000422_140 Hb_005895_040 Hb_005895_040 Hb_000365_140--Hb_005895_040 Hb_002351_020 Hb_002351_020 Hb_000032_490--Hb_002351_020 Hb_000032_490--Hb_021422_010 Hb_000032_490--Hb_000946_120 Hb_000032_490--Hb_000832_090 Hb_001541_260 Hb_001541_260 Hb_000032_490--Hb_001541_260 Hb_000732_120 Hb_000732_120 Hb_000832_090--Hb_000732_120 Hb_000832_090--Hb_002351_020 Hb_001347_040 Hb_001347_040 Hb_000832_090--Hb_001347_040 Hb_001377_070 Hb_001377_070 Hb_000832_090--Hb_001377_070 Hb_000959_270 Hb_000959_270 Hb_000832_090--Hb_000959_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3761 8.71689 9.92028 6.85489 21.8105 10.2812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.40652 7.07446 8.39511 4.84723 3.61805

CAGE analysis