Hb_025708_010

Information

Type -
Description -
Location Contig25708: 128-1084
Sequence    

Annotation

kegg
ID mtr:MTR_1g051060
description hypothetical protein
nr
ID XP_003590289.1
description hypothetical protein MTR_1g051060 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID W5DGD9
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025708_010 0.0 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
2 Hb_025708_020 0.1100679422 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_168319_010 0.1558696423 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
4 Hb_012340_060 0.161049668 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000123_240 0.1614434666 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_000123_220 0.1697451108 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
7 Hb_007262_030 0.1730124727 - - -
8 Hb_002027_030 0.1743209476 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006120_150 0.1808445128 - - invertase [Hevea brasiliensis]
10 Hb_069591_010 0.185804281 - - -
11 Hb_002042_170 0.1864869178 - - RING/U-box superfamily protein [Theobroma cacao]
12 Hb_000656_390 0.1871329071 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
13 Hb_023344_060 0.1878679491 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
14 Hb_010872_070 0.1882466324 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000951_130 0.18971765 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
16 Hb_001381_060 0.1910186223 - - monoxygenase, putative [Ricinus communis]
17 Hb_001486_200 0.1939924756 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
18 Hb_001956_060 0.1971921555 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
19 Hb_012092_090 0.1994219575 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X2 [Jatropha curcas]
20 Hb_128589_010 0.201716624 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_025708_010 Hb_025708_010 Hb_025708_020 Hb_025708_020 Hb_025708_010--Hb_025708_020 Hb_168319_010 Hb_168319_010 Hb_025708_010--Hb_168319_010 Hb_012340_060 Hb_012340_060 Hb_025708_010--Hb_012340_060 Hb_000123_240 Hb_000123_240 Hb_025708_010--Hb_000123_240 Hb_000123_220 Hb_000123_220 Hb_025708_010--Hb_000123_220 Hb_007262_030 Hb_007262_030 Hb_025708_010--Hb_007262_030 Hb_000226_080 Hb_000226_080 Hb_025708_020--Hb_000226_080 Hb_025708_020--Hb_012340_060 Hb_025708_020--Hb_168319_010 Hb_023344_060 Hb_023344_060 Hb_025708_020--Hb_023344_060 Hb_000656_390 Hb_000656_390 Hb_025708_020--Hb_000656_390 Hb_168319_010--Hb_012340_060 Hb_002027_030 Hb_002027_030 Hb_168319_010--Hb_002027_030 Hb_001619_040 Hb_001619_040 Hb_168319_010--Hb_001619_040 Hb_168319_010--Hb_000123_220 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_027654_080 Hb_027654_080 Hb_012340_060--Hb_027654_080 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_006120_150 Hb_006120_150 Hb_000123_240--Hb_006120_150 Hb_001247_020 Hb_001247_020 Hb_000123_240--Hb_001247_020 Hb_000123_240--Hb_025708_020 Hb_002343_010 Hb_002343_010 Hb_000123_240--Hb_002343_010 Hb_002766_050 Hb_002766_050 Hb_000123_240--Hb_002766_050 Hb_000123_220--Hb_006120_150 Hb_000123_220--Hb_012340_060 Hb_004680_010 Hb_004680_010 Hb_000123_220--Hb_004680_010 Hb_002042_170 Hb_002042_170 Hb_000123_220--Hb_002042_170 Hb_000123_220--Hb_002027_030 Hb_007262_030--Hb_004429_020 Hb_007386_040 Hb_007386_040 Hb_007262_030--Hb_007386_040 Hb_000120_640 Hb_000120_640 Hb_007262_030--Hb_000120_640 Hb_000189_410 Hb_000189_410 Hb_007262_030--Hb_000189_410 Hb_000215_280 Hb_000215_280 Hb_007262_030--Hb_000215_280 Hb_011861_100 Hb_011861_100 Hb_007262_030--Hb_011861_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.508173 1.85376 1.35687 1.35384 0 0.175524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.292768 0.633003 1.75931 1.05047 0.688711

CAGE analysis