Hb_025708_020

Information

Type -
Description -
Location Contig25708: 1905-5878
Sequence    

Annotation

kegg
ID rcu:RCOM_0381140
description receptor protein kinase, putative
nr
ID XP_002534282.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID C0LGQ4
description Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1
trembl
ID B9T7R3
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0381140 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase mrh1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26748: 2836-4277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025708_020 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_025708_010 0.1100679422 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
3 Hb_000226_080 0.1473879976 - - prephenate dehydrogenase, putative [Ricinus communis]
4 Hb_012340_060 0.1525753269 - - conserved hypothetical protein [Ricinus communis]
5 Hb_168319_010 0.1566777941 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
6 Hb_023344_060 0.1592318633 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
7 Hb_000656_390 0.1649631356 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
8 Hb_000270_120 0.1666652844 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
9 Hb_000152_330 0.1667272076 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
10 Hb_165026_010 0.1685421446 transcription factor TF Family: NAC hypothetical protein JCGZ_14166 [Jatropha curcas]
11 Hb_000951_130 0.1687935774 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
12 Hb_012573_040 0.1705196734 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
13 Hb_001959_120 0.1745315859 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
14 Hb_001956_060 0.1769463693 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
15 Hb_000123_240 0.1774400736 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_001105_110 0.1775665707 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002042_170 0.1807431437 - - RING/U-box superfamily protein [Theobroma cacao]
18 Hb_003327_070 0.1819052587 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
19 Hb_001619_040 0.1820079372 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
20 Hb_000116_210 0.1840184974 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]

Gene co-expression network

sample Hb_025708_020 Hb_025708_020 Hb_025708_010 Hb_025708_010 Hb_025708_020--Hb_025708_010 Hb_000226_080 Hb_000226_080 Hb_025708_020--Hb_000226_080 Hb_012340_060 Hb_012340_060 Hb_025708_020--Hb_012340_060 Hb_168319_010 Hb_168319_010 Hb_025708_020--Hb_168319_010 Hb_023344_060 Hb_023344_060 Hb_025708_020--Hb_023344_060 Hb_000656_390 Hb_000656_390 Hb_025708_020--Hb_000656_390 Hb_025708_010--Hb_168319_010 Hb_025708_010--Hb_012340_060 Hb_000123_240 Hb_000123_240 Hb_025708_010--Hb_000123_240 Hb_000123_220 Hb_000123_220 Hb_025708_010--Hb_000123_220 Hb_007262_030 Hb_007262_030 Hb_025708_010--Hb_007262_030 Hb_004993_060 Hb_004993_060 Hb_000226_080--Hb_004993_060 Hb_024404_020 Hb_024404_020 Hb_000226_080--Hb_024404_020 Hb_000270_120 Hb_000270_120 Hb_000226_080--Hb_000270_120 Hb_000549_040 Hb_000549_040 Hb_000226_080--Hb_000549_040 Hb_001619_040 Hb_001619_040 Hb_000226_080--Hb_001619_040 Hb_000239_020 Hb_000239_020 Hb_000226_080--Hb_000239_020 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_012340_060--Hb_168319_010 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_027654_080 Hb_027654_080 Hb_012340_060--Hb_027654_080 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_002027_030 Hb_002027_030 Hb_168319_010--Hb_002027_030 Hb_168319_010--Hb_001619_040 Hb_168319_010--Hb_000123_220 Hb_000116_210 Hb_000116_210 Hb_023344_060--Hb_000116_210 Hb_012286_090 Hb_012286_090 Hb_023344_060--Hb_012286_090 Hb_000111_370 Hb_000111_370 Hb_023344_060--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_023344_060--Hb_009372_020 Hb_004724_330 Hb_004724_330 Hb_023344_060--Hb_004724_330 Hb_000805_190 Hb_000805_190 Hb_023344_060--Hb_000805_190 Hb_000951_130 Hb_000951_130 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_001723_100 Hb_001723_100 Hb_000656_390--Hb_001723_100 Hb_000152_330 Hb_000152_330 Hb_000656_390--Hb_000152_330 Hb_002272_030 Hb_002272_030 Hb_000656_390--Hb_002272_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.429933 2.95428 1.23834 1.32542 0.111244 0.225219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.417879 0.760309 2.32913 1.46535 0.951428

CAGE analysis