Hb_025814_010

Information

Type -
Description -
Location Contig25814: 1111-2335
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015585mg
description hypothetical protein
nr
ID XP_007220188.1
description hypothetical protein PRUPE_ppa015585mg [Prunus persica]
swissprot
ID Q9FNZ1
description Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1
trembl
ID M5X5Q1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015585mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025814_010 0.0 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
2 Hb_000307_200 0.0905901162 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
3 Hb_000045_070 0.0926054606 - - conserved hypothetical protein [Ricinus communis]
4 Hb_150204_010 0.1071855623 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_007192_080 0.1197873873 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
6 Hb_003195_060 0.1199781352 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
7 Hb_000696_350 0.1275300028 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
8 Hb_008511_050 0.1292873511 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
9 Hb_000424_240 0.1321398167 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
10 Hb_033312_140 0.1338022881 - - RNA and export factor-binding family protein [Populus trichocarpa]
11 Hb_000229_040 0.1352066216 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
12 Hb_003434_060 0.1354219827 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
13 Hb_000230_330 0.1355579283 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
14 Hb_028900_020 0.1366852158 - - unnamed protein product [Coffea canephora]
15 Hb_051407_010 0.1367307062 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
16 Hb_000364_150 0.1374845632 - - -
17 Hb_000384_090 0.1382717878 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
18 Hb_021409_020 0.1385258814 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
19 Hb_039253_010 0.1386394913 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
20 Hb_002046_040 0.1393579442 - - PREDICTED: topless-related protein 4 [Malus domestica]

Gene co-expression network

sample Hb_025814_010 Hb_025814_010 Hb_000307_200 Hb_000307_200 Hb_025814_010--Hb_000307_200 Hb_000045_070 Hb_000045_070 Hb_025814_010--Hb_000045_070 Hb_150204_010 Hb_150204_010 Hb_025814_010--Hb_150204_010 Hb_007192_080 Hb_007192_080 Hb_025814_010--Hb_007192_080 Hb_003195_060 Hb_003195_060 Hb_025814_010--Hb_003195_060 Hb_000696_350 Hb_000696_350 Hb_025814_010--Hb_000696_350 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000077_050 Hb_000077_050 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000307_200--Hb_000045_070 Hb_009543_030 Hb_009543_030 Hb_000045_070--Hb_009543_030 Hb_000045_070--Hb_028900_020 Hb_005735_030 Hb_005735_030 Hb_000045_070--Hb_005735_030 Hb_001902_050 Hb_001902_050 Hb_000045_070--Hb_001902_050 Hb_033312_140 Hb_033312_140 Hb_150204_010--Hb_033312_140 Hb_041392_010 Hb_041392_010 Hb_150204_010--Hb_041392_010 Hb_004198_010 Hb_004198_010 Hb_150204_010--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_150204_010--Hb_004450_010 Hb_083043_010 Hb_083043_010 Hb_150204_010--Hb_083043_010 Hb_150204_010--Hb_003434_060 Hb_007192_080--Hb_003195_060 Hb_001866_110 Hb_001866_110 Hb_007192_080--Hb_001866_110 Hb_009535_020 Hb_009535_020 Hb_007192_080--Hb_009535_020 Hb_008511_050 Hb_008511_050 Hb_007192_080--Hb_008511_050 Hb_002200_130 Hb_002200_130 Hb_007192_080--Hb_002200_130 Hb_000014_150 Hb_000014_150 Hb_007192_080--Hb_000014_150 Hb_003195_060--Hb_008511_050 Hb_002609_110 Hb_002609_110 Hb_003195_060--Hb_002609_110 Hb_003195_070 Hb_003195_070 Hb_003195_060--Hb_003195_070 Hb_002811_360 Hb_002811_360 Hb_003195_060--Hb_002811_360 Hb_006332_010 Hb_006332_010 Hb_003195_060--Hb_006332_010 Hb_005754_060 Hb_005754_060 Hb_003195_060--Hb_005754_060 Hb_000696_350--Hb_008511_050 Hb_000679_150 Hb_000679_150 Hb_000696_350--Hb_000679_150 Hb_006455_110 Hb_006455_110 Hb_000696_350--Hb_006455_110 Hb_012286_050 Hb_012286_050 Hb_000696_350--Hb_012286_050 Hb_006455_090 Hb_006455_090 Hb_000696_350--Hb_006455_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1802 11.164 9.4551 34.0868 79.2796 118.857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.443 32.8905 48.827 35.042 9.22164

CAGE analysis