Hb_026186_010

Information

Type -
Description -
Location Contig26186: 32902-35521
Sequence    

Annotation

kegg
ID rcu:RCOM_1553860
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID KDP37687.1
description hypothetical protein JCGZ_06344 [Jatropha curcas]
swissprot
ID Q93Y09
description Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1
trembl
ID A0A067KNI6
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_06344 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026186_010 0.0 - - hypothetical protein JCGZ_06344 [Jatropha curcas]
2 Hb_000172_630 0.1039875792 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_001369_290 0.1558481213 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_088117_010 0.2249237657 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_139569_010 0.2391066079 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
6 Hb_185754_010 0.2497071854 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_004453_190 0.2765327475 - - -
8 Hb_001016_020 0.2771630541 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009252_120 0.3133207353 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005097_010 0.3231637295 - - PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]
11 Hb_006816_160 0.3235180607 - - hypothetical protein RCOM_1434920 [Ricinus communis]
12 Hb_133661_010 0.3334574376 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
13 Hb_001184_140 0.3356349225 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
14 Hb_002571_040 0.3392901883 - - hypothetical protein RCOM_1321060 [Ricinus communis]
15 Hb_007304_100 0.3471061527 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
16 Hb_005045_050 0.3471598705 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
17 Hb_162047_010 0.347831588 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
18 Hb_001231_040 0.3500334374 - - hypothetical protein POPTR_0006s06470g [Populus trichocarpa]
19 Hb_176486_020 0.352956247 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Populus euphratica]
20 Hb_000216_010 0.3551519524 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]

Gene co-expression network

sample Hb_026186_010 Hb_026186_010 Hb_000172_630 Hb_000172_630 Hb_026186_010--Hb_000172_630 Hb_001369_290 Hb_001369_290 Hb_026186_010--Hb_001369_290 Hb_088117_010 Hb_088117_010 Hb_026186_010--Hb_088117_010 Hb_139569_010 Hb_139569_010 Hb_026186_010--Hb_139569_010 Hb_185754_010 Hb_185754_010 Hb_026186_010--Hb_185754_010 Hb_004453_190 Hb_004453_190 Hb_026186_010--Hb_004453_190 Hb_000172_630--Hb_088117_010 Hb_005097_010 Hb_005097_010 Hb_000172_630--Hb_005097_010 Hb_000172_630--Hb_001369_290 Hb_000172_630--Hb_185754_010 Hb_001016_020 Hb_001016_020 Hb_000172_630--Hb_001016_020 Hb_001369_290--Hb_139569_010 Hb_001369_290--Hb_088117_010 Hb_001369_290--Hb_185754_010 Hb_005694_030 Hb_005694_030 Hb_001369_290--Hb_005694_030 Hb_088117_010--Hb_185754_010 Hb_009252_120 Hb_009252_120 Hb_088117_010--Hb_009252_120 Hb_006816_160 Hb_006816_160 Hb_088117_010--Hb_006816_160 Hb_008725_190 Hb_008725_190 Hb_088117_010--Hb_008725_190 Hb_139569_010--Hb_004453_190 Hb_000216_010 Hb_000216_010 Hb_139569_010--Hb_000216_010 Hb_139569_010--Hb_088117_010 Hb_139569_010--Hb_001016_020 Hb_185754_010--Hb_001016_020 Hb_003023_080 Hb_003023_080 Hb_185754_010--Hb_003023_080 Hb_185754_010--Hb_139569_010 Hb_129105_010 Hb_129105_010 Hb_004453_190--Hb_129105_010 Hb_004453_190--Hb_001016_020 Hb_021596_060 Hb_021596_060 Hb_004453_190--Hb_021596_060 Hb_133661_010 Hb_133661_010 Hb_004453_190--Hb_133661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0384743 0 0.044687 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0260051 0 0 0

CAGE analysis