Hb_026188_010

Information

Type -
Description -
Location Contig26188: 20245-22646
Sequence    

Annotation

kegg
ID vvi:100252918
description tropinone reductase homolog
nr
ID XP_012080617.1
description PREDICTED: tropinone reductase homolog [Jatropha curcas]
swissprot
ID P50165
description Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1
trembl
ID A0A067K3K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13724 PE=4 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27367: 20497-22625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026188_010 0.0 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
2 Hb_009095_020 0.076656254 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
3 Hb_000336_130 0.090454741 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
4 Hb_000645_270 0.0922063432 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
5 Hb_063885_010 0.0940447114 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
6 Hb_034168_060 0.09431473 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
7 Hb_001999_330 0.1022833358 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
8 Hb_003947_020 0.1026859068 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
9 Hb_086691_010 0.108312523 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_031194_020 0.1101541299 - - BnaCnng13030D [Brassica napus]
11 Hb_083242_040 0.1118349216 - - -
12 Hb_003228_060 0.1125619835 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000696_200 0.1126309138 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
14 Hb_006331_010 0.113590943 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
15 Hb_007101_090 0.1136721405 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
16 Hb_001715_050 0.1149705219 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
17 Hb_007645_040 0.1156483514 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
18 Hb_052139_010 0.1181958305 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
19 Hb_001001_130 0.1211052244 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
20 Hb_004138_020 0.1215380677 - - PREDICTED: cucumisin-like [Populus euphratica]

Gene co-expression network

sample Hb_026188_010 Hb_026188_010 Hb_009095_020 Hb_009095_020 Hb_026188_010--Hb_009095_020 Hb_000336_130 Hb_000336_130 Hb_026188_010--Hb_000336_130 Hb_000645_270 Hb_000645_270 Hb_026188_010--Hb_000645_270 Hb_063885_010 Hb_063885_010 Hb_026188_010--Hb_063885_010 Hb_034168_060 Hb_034168_060 Hb_026188_010--Hb_034168_060 Hb_001999_330 Hb_001999_330 Hb_026188_010--Hb_001999_330 Hb_006331_010 Hb_006331_010 Hb_009095_020--Hb_006331_010 Hb_048694_010 Hb_048694_010 Hb_009095_020--Hb_048694_010 Hb_001081_070 Hb_001081_070 Hb_009095_020--Hb_001081_070 Hb_083242_040 Hb_083242_040 Hb_009095_020--Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_009095_020--Hb_001715_050 Hb_000336_130--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_000336_130--Hb_002010_010 Hb_171685_070 Hb_171685_070 Hb_000336_130--Hb_171685_070 Hb_000336_130--Hb_063885_010 Hb_007101_090 Hb_007101_090 Hb_000336_130--Hb_007101_090 Hb_031194_020 Hb_031194_020 Hb_000645_270--Hb_031194_020 Hb_003622_050 Hb_003622_050 Hb_000645_270--Hb_003622_050 Hb_000645_270--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_052139_010 Hb_052139_010 Hb_000645_270--Hb_052139_010 Hb_000645_270--Hb_009095_020 Hb_063885_010--Hb_003947_020 Hb_063885_010--Hb_034168_060 Hb_063885_010--Hb_009095_020 Hb_000696_200 Hb_000696_200 Hb_063885_010--Hb_000696_200 Hb_034168_060--Hb_000696_200 Hb_003228_060 Hb_003228_060 Hb_034168_060--Hb_003228_060 Hb_034168_060--Hb_083242_040 Hb_034168_060--Hb_001715_050 Hb_007645_040 Hb_007645_040 Hb_034168_060--Hb_007645_040 Hb_034168_060--Hb_006331_010 Hb_001999_330--Hb_007101_090 Hb_001999_330--Hb_002010_010 Hb_001999_330--Hb_000645_270 Hb_000844_060 Hb_000844_060 Hb_001999_330--Hb_000844_060 Hb_001999_330--Hb_009095_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0229141 0.0230018 1.19239 1.96048 0 0.106332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.697979 32.5418

CAGE analysis