Hb_026196_020

Information

Type -
Description -
Location Contig26196: 37968-40214
Sequence    

Annotation

kegg
ID rcu:RCOM_0851910
description transferase, transferring glycosyl groups, putative (EC:2.4.1.12)
nr
ID XP_002517383.1
description transferase, transferring glycosyl groups, putative [Ricinus communis]
swissprot
ID Q9LJP4
description Xyloglucan glycosyltransferase 4 OS=Arabidopsis thaliana GN=CSLC4 PE=1 SV=1
trembl
ID B9RUD8
description Transferase, transferring glycosyl groups, putative OS=Ricinus communis GN=RCOM_0851910 PE=4 SV=1
Gene Ontology
ID GO:0005768
description xyloglucan glycosyltransferase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27368: 38334-38780 , PASA_asmbl_27369: 38818-39126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026196_020 0.0 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
2 Hb_188742_010 0.0471006886 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
3 Hb_124677_070 0.0545707911 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
4 Hb_000802_040 0.0582160224 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
5 Hb_010327_040 0.0759394396 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
6 Hb_000742_040 0.0798141256 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
7 Hb_000896_030 0.087740797 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001369_490 0.0907652379 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
9 Hb_002999_020 0.0938010468 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
10 Hb_000141_050 0.1038039965 - - hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
11 Hb_004690_020 0.1042270308 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
12 Hb_001416_120 0.1048810655 - - caspase, putative [Ricinus communis]
13 Hb_000796_110 0.1107897012 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
14 Hb_001136_150 0.111152983 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000130_430 0.1111589752 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
16 Hb_001248_160 0.1111929944 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
17 Hb_000330_010 0.1113249455 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
18 Hb_086639_110 0.1113335341 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
19 Hb_163180_010 0.1113676562 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_001926_060 0.1114413264 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_026196_020 Hb_026196_020 Hb_188742_010 Hb_188742_010 Hb_026196_020--Hb_188742_010 Hb_124677_070 Hb_124677_070 Hb_026196_020--Hb_124677_070 Hb_000802_040 Hb_000802_040 Hb_026196_020--Hb_000802_040 Hb_010327_040 Hb_010327_040 Hb_026196_020--Hb_010327_040 Hb_000742_040 Hb_000742_040 Hb_026196_020--Hb_000742_040 Hb_000896_030 Hb_000896_030 Hb_026196_020--Hb_000896_030 Hb_188742_010--Hb_124677_070 Hb_000141_050 Hb_000141_050 Hb_188742_010--Hb_000141_050 Hb_188742_010--Hb_000896_030 Hb_188742_010--Hb_000742_040 Hb_012675_010 Hb_012675_010 Hb_188742_010--Hb_012675_010 Hb_124677_070--Hb_000742_040 Hb_124677_070--Hb_000802_040 Hb_002999_020 Hb_002999_020 Hb_124677_070--Hb_002999_020 Hb_124677_070--Hb_010327_040 Hb_000802_040--Hb_010327_040 Hb_001416_120 Hb_001416_120 Hb_000802_040--Hb_001416_120 Hb_000802_040--Hb_002999_020 Hb_004693_040 Hb_004693_040 Hb_000802_040--Hb_004693_040 Hb_004396_020 Hb_004396_020 Hb_010327_040--Hb_004396_020 Hb_024066_020 Hb_024066_020 Hb_010327_040--Hb_024066_020 Hb_007007_140 Hb_007007_140 Hb_010327_040--Hb_007007_140 Hb_010327_040--Hb_004693_040 Hb_000392_080 Hb_000392_080 Hb_010327_040--Hb_000392_080 Hb_000742_040--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_000742_040--Hb_000796_110 Hb_016734_110 Hb_016734_110 Hb_000742_040--Hb_016734_110 Hb_153258_030 Hb_153258_030 Hb_000742_040--Hb_153258_030 Hb_000742_040--Hb_000802_040 Hb_131748_010 Hb_131748_010 Hb_000896_030--Hb_131748_010 Hb_000134_140 Hb_000134_140 Hb_000896_030--Hb_000134_140 Hb_000340_170 Hb_000340_170 Hb_000896_030--Hb_000340_170 Hb_156212_010 Hb_156212_010 Hb_000896_030--Hb_156212_010 Hb_000002_020 Hb_000002_020 Hb_000896_030--Hb_000002_020 Hb_004957_040 Hb_004957_040 Hb_000896_030--Hb_004957_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.68693 6.59784 0 0.0192304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.18876

CAGE analysis