Hb_026198_010

Information

Type -
Description -
Location Contig26198: 28227-35230
Sequence    

Annotation

kegg
ID rcu:RCOM_0261650
description DNA-directed RNA polymerase II, putative
nr
ID XP_012072607.1
description PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L031
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06357 PE=4 SV=1
Gene Ontology
ID GO:0003899
description dna-directed rna polymerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026198_010 0.0 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
2 Hb_000120_810 0.0670440087 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
3 Hb_000926_260 0.0772895574 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003687_120 0.0822922623 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
5 Hb_006637_030 0.083817667 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
6 Hb_002693_030 0.0849745124 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
7 Hb_001140_090 0.0875028892 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003428_090 0.0877244439 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
9 Hb_000012_240 0.0879571558 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
10 Hb_000704_030 0.0884545089 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
11 Hb_004079_130 0.0897576321 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
12 Hb_002203_030 0.0900967305 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
13 Hb_060094_010 0.0901042212 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
14 Hb_189216_010 0.09257792 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
15 Hb_002686_150 0.0927659292 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_002304_050 0.0941201089 - - pyruvate kinase, putative [Ricinus communis]
17 Hb_001328_080 0.095797135 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
18 Hb_178968_060 0.0959204979 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
19 Hb_000193_260 0.096616344 - - PREDICTED: protein NEN1 [Jatropha curcas]
20 Hb_000680_120 0.0979158504 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]

Gene co-expression network

sample Hb_026198_010 Hb_026198_010 Hb_000120_810 Hb_000120_810 Hb_026198_010--Hb_000120_810 Hb_000926_260 Hb_000926_260 Hb_026198_010--Hb_000926_260 Hb_003687_120 Hb_003687_120 Hb_026198_010--Hb_003687_120 Hb_006637_030 Hb_006637_030 Hb_026198_010--Hb_006637_030 Hb_002693_030 Hb_002693_030 Hb_026198_010--Hb_002693_030 Hb_001140_090 Hb_001140_090 Hb_026198_010--Hb_001140_090 Hb_000704_030 Hb_000704_030 Hb_000120_810--Hb_000704_030 Hb_004079_130 Hb_004079_130 Hb_000120_810--Hb_004079_130 Hb_000603_160 Hb_000603_160 Hb_000120_810--Hb_000603_160 Hb_189216_010 Hb_189216_010 Hb_000120_810--Hb_189216_010 Hb_000680_120 Hb_000680_120 Hb_000120_810--Hb_000680_120 Hb_001328_080 Hb_001328_080 Hb_000926_260--Hb_001328_080 Hb_060094_010 Hb_060094_010 Hb_000926_260--Hb_060094_010 Hb_006468_010 Hb_006468_010 Hb_000926_260--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_000926_260--Hb_003636_080 Hb_089140_040 Hb_089140_040 Hb_000926_260--Hb_089140_040 Hb_003470_040 Hb_003470_040 Hb_003687_120--Hb_003470_040 Hb_008725_050 Hb_008725_050 Hb_003687_120--Hb_008725_050 Hb_003428_090 Hb_003428_090 Hb_003687_120--Hb_003428_090 Hb_000723_030 Hb_000723_030 Hb_003687_120--Hb_000723_030 Hb_000890_160 Hb_000890_160 Hb_003687_120--Hb_000890_160 Hb_178968_060 Hb_178968_060 Hb_003687_120--Hb_178968_060 Hb_000723_230 Hb_000723_230 Hb_006637_030--Hb_000723_230 Hb_006637_030--Hb_002693_030 Hb_053709_050 Hb_053709_050 Hb_006637_030--Hb_053709_050 Hb_006637_030--Hb_189216_010 Hb_005653_070 Hb_005653_070 Hb_006637_030--Hb_005653_070 Hb_007850_030 Hb_007850_030 Hb_002693_030--Hb_007850_030 Hb_000330_090 Hb_000330_090 Hb_002693_030--Hb_000330_090 Hb_002693_030--Hb_053709_050 Hb_002534_130 Hb_002534_130 Hb_002693_030--Hb_002534_130 Hb_007839_020 Hb_007839_020 Hb_001140_090--Hb_007839_020 Hb_000156_090 Hb_000156_090 Hb_001140_090--Hb_000156_090 Hb_001140_090--Hb_001328_080 Hb_002965_050 Hb_002965_050 Hb_001140_090--Hb_002965_050 Hb_026198_060 Hb_026198_060 Hb_001140_090--Hb_026198_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.05653 18.7826 24.2274 21.8388 4.1687 6.14767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.76711 12.3341 8.62604 16.5188 12.2229

CAGE analysis