Hb_026198_050

Information

Type -
Description -
Location Contig26198: 103346-105415
Sequence    

Annotation

kegg
ID rcu:RCOM_0685920
description peptidase, putative
nr
ID XP_012065774.1
description PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
swissprot
ID Q9MAP5
description Subtilisin-like protease SBT3.3 OS=Arabidopsis thaliana GN=SBT3.3 PE=2 SV=1
trembl
ID A0A067L4H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25466 PE=4 SV=1
Gene Ontology
ID GO:0005829
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27388: 103490-105307 , PASA_asmbl_27390: 104042-104421 , PASA_asmbl_27391: 103979-105307
cDNA
(Sanger)
(ID:Location)		 018_D06.ab1: 103593-104972

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026198_050 0.0 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
2 Hb_004012_010 0.0667943322 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
3 Hb_000392_270 0.0711374501 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
4 Hb_002762_060 0.0765586879 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
5 Hb_003551_020 0.0765588039 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
6 Hb_001138_050 0.0830154957 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
7 Hb_004722_060 0.0832608872 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
8 Hb_021068_050 0.08431693 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
9 Hb_004920_040 0.0844402852 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
10 Hb_000056_340 0.0845676122 - - 60S ribosomal protein L34A [Hevea brasiliensis]
11 Hb_009615_150 0.0850748378 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
12 Hb_024835_030 0.0868843293 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
13 Hb_000045_130 0.0890457223 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
14 Hb_003994_180 0.0898460411 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
15 Hb_006775_080 0.0900594012 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
16 Hb_011537_010 0.0901820223 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
17 Hb_000621_080 0.0914107636 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001143_170 0.0920871846 - - nucellin, putative [Ricinus communis]
19 Hb_000977_080 0.0924443261 - - type II inositol 5-phosphatase, putative [Ricinus communis]
20 Hb_002495_070 0.0949716359 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]

Gene co-expression network

sample Hb_026198_050 Hb_026198_050 Hb_004012_010 Hb_004012_010 Hb_026198_050--Hb_004012_010 Hb_000392_270 Hb_000392_270 Hb_026198_050--Hb_000392_270 Hb_002762_060 Hb_002762_060 Hb_026198_050--Hb_002762_060 Hb_003551_020 Hb_003551_020 Hb_026198_050--Hb_003551_020 Hb_001138_050 Hb_001138_050 Hb_026198_050--Hb_001138_050 Hb_004722_060 Hb_004722_060 Hb_026198_050--Hb_004722_060 Hb_024835_030 Hb_024835_030 Hb_004012_010--Hb_024835_030 Hb_006775_080 Hb_006775_080 Hb_004012_010--Hb_006775_080 Hb_004920_040 Hb_004920_040 Hb_004012_010--Hb_004920_040 Hb_003185_020 Hb_003185_020 Hb_004012_010--Hb_003185_020 Hb_004012_010--Hb_002762_060 Hb_000977_080 Hb_000977_080 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_002762_060--Hb_024835_030 Hb_004221_010 Hb_004221_010 Hb_002762_060--Hb_004221_010 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_000019_230 Hb_000019_230 Hb_003551_020--Hb_000019_230 Hb_003551_020--Hb_000977_080 Hb_000045_130 Hb_000045_130 Hb_003551_020--Hb_000045_130 Hb_003551_020--Hb_003878_190 Hb_000154_080 Hb_000154_080 Hb_003551_020--Hb_000154_080 Hb_000398_180 Hb_000398_180 Hb_001138_050--Hb_000398_180 Hb_001138_050--Hb_000720_120 Hb_001377_290 Hb_001377_290 Hb_001138_050--Hb_001377_290 Hb_005357_030 Hb_005357_030 Hb_001138_050--Hb_005357_030 Hb_001259_090 Hb_001259_090 Hb_001138_050--Hb_001259_090 Hb_019253_020 Hb_019253_020 Hb_001138_050--Hb_019253_020 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_003688_100 Hb_003688_100 Hb_004722_060--Hb_003688_100 Hb_000265_150 Hb_000265_150 Hb_004722_060--Hb_000265_150 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_002495_070 Hb_002495_070 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
515.474 304.022 130.097 161.141 577.994 438.148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
678.336 666.871 397.821 153.826 52.3689

CAGE analysis