Hb_026198_060

Information

Type -
Description -
Location Contig26198: 108186-113332
Sequence    

Annotation

kegg
ID rcu:RCOM_0685930
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012065771.1
description PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
swissprot
ID Q39016
description Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=2
trembl
ID A0A067L4M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25462 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27392: 108240-113063
cDNA
(Sanger)
(ID:Location)		 024_P16.ab1: 108240-110052

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026198_060 0.0 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
2 Hb_005288_140 0.0691511902 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
3 Hb_000649_250 0.0708999664 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
4 Hb_022425_060 0.0731922931 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
5 Hb_001257_100 0.0746508863 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_004517_020 0.0753518698 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
7 Hb_001259_120 0.0756533968 - - hypothetical protein EUGRSUZ_C043222, partial [Eucalyptus grandis]
8 Hb_005649_080 0.0760005794 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
9 Hb_170077_010 0.0772419704 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
10 Hb_031641_010 0.0794090199 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001329_200 0.0807961882 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
12 Hb_020805_150 0.0820743564 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_002928_190 0.0820994778 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
14 Hb_004899_040 0.0822289301 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
15 Hb_024650_080 0.0824995637 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
16 Hb_000174_150 0.0833392531 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
17 Hb_000977_300 0.0839244284 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
18 Hb_000363_120 0.0845760348 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
19 Hb_000197_030 0.0850533692 - - hypothetical protein RCOM_1447500 [Ricinus communis]
20 Hb_001328_080 0.0861893071 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]

Gene co-expression network

sample Hb_026198_060 Hb_026198_060 Hb_005288_140 Hb_005288_140 Hb_026198_060--Hb_005288_140 Hb_000649_250 Hb_000649_250 Hb_026198_060--Hb_000649_250 Hb_022425_060 Hb_022425_060 Hb_026198_060--Hb_022425_060 Hb_001257_100 Hb_001257_100 Hb_026198_060--Hb_001257_100 Hb_004517_020 Hb_004517_020 Hb_026198_060--Hb_004517_020 Hb_001259_120 Hb_001259_120 Hb_026198_060--Hb_001259_120 Hb_004319_050 Hb_004319_050 Hb_005288_140--Hb_004319_050 Hb_000866_450 Hb_000866_450 Hb_005288_140--Hb_000866_450 Hb_000174_150 Hb_000174_150 Hb_005288_140--Hb_000174_150 Hb_005403_010 Hb_005403_010 Hb_005288_140--Hb_005403_010 Hb_033152_090 Hb_033152_090 Hb_005288_140--Hb_033152_090 Hb_003918_030 Hb_003918_030 Hb_000649_250--Hb_003918_030 Hb_004899_040 Hb_004899_040 Hb_000649_250--Hb_004899_040 Hb_000649_250--Hb_022425_060 Hb_000649_250--Hb_004517_020 Hb_000649_250--Hb_001257_100 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_022425_060--Hb_003918_030 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_000926_150 Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_000120_910 Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_001723_010 Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_000110_350 Hb_000110_350 Hb_004517_020--Hb_000110_350 Hb_000010_420 Hb_000010_420 Hb_001259_120--Hb_000010_420 Hb_004645_070 Hb_004645_070 Hb_001259_120--Hb_004645_070 Hb_001259_120--Hb_001257_100 Hb_002005_030 Hb_002005_030 Hb_001259_120--Hb_002005_030 Hb_001167_050 Hb_001167_050 Hb_001259_120--Hb_001167_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8024 73.7548 44.2227 52.5463 19.5862 26.3752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8215 18.7699 22.6847 41.9784 33.8348

CAGE analysis