Hb_026198_070

Information

Type -
Description -
Location Contig26198: 114343-120220
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11320g
description POPTRDRAFT_836114; hypothetical protein
nr
ID XP_012065770.1
description PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
swissprot
ID Q8L586
description Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1
trembl
ID A0A067L7Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25458 PE=4 SV=1
Gene Ontology
ID GO:0003676
description uncharacterized membrane protein at4g09580-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27396: 116179-116416 , PASA_asmbl_27397: 117059-117158 , PASA_asmbl_27398: 118331-119968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026198_070 0.0 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
2 Hb_000441_200 0.0585629801 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
3 Hb_002110_190 0.0585711888 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
4 Hb_000254_090 0.0601606394 - - PREDICTED: la protein 2 [Jatropha curcas]
5 Hb_000640_170 0.063990875 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
6 Hb_002044_150 0.0640765265 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
7 Hb_007479_040 0.0644578722 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000172_290 0.064996955 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
9 Hb_009898_050 0.0701199418 - - PREDICTED: beta-taxilin [Jatropha curcas]
10 Hb_011037_030 0.0703656778 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
11 Hb_000156_010 0.0704221791 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
12 Hb_000081_160 0.0705432455 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
13 Hb_000260_350 0.0709025082 - - conserved hypothetical protein [Ricinus communis]
14 Hb_054865_150 0.0731153474 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
15 Hb_073973_100 0.0731260298 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
16 Hb_168978_030 0.0737406282 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
17 Hb_003376_330 0.0742718114 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
18 Hb_000019_030 0.0744883889 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
19 Hb_001366_370 0.0751803613 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
20 Hb_012498_010 0.0752945762 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]

Gene co-expression network

sample Hb_026198_070 Hb_026198_070 Hb_000441_200 Hb_000441_200 Hb_026198_070--Hb_000441_200 Hb_002110_190 Hb_002110_190 Hb_026198_070--Hb_002110_190 Hb_000254_090 Hb_000254_090 Hb_026198_070--Hb_000254_090 Hb_000640_170 Hb_000640_170 Hb_026198_070--Hb_000640_170 Hb_002044_150 Hb_002044_150 Hb_026198_070--Hb_002044_150 Hb_007479_040 Hb_007479_040 Hb_026198_070--Hb_007479_040 Hb_000081_160 Hb_000081_160 Hb_000441_200--Hb_000081_160 Hb_000111_320 Hb_000111_320 Hb_000441_200--Hb_000111_320 Hb_000466_140 Hb_000466_140 Hb_000441_200--Hb_000466_140 Hb_000441_200--Hb_000254_090 Hb_001318_280 Hb_001318_280 Hb_000441_200--Hb_001318_280 Hb_002110_190--Hb_007479_040 Hb_004567_090 Hb_004567_090 Hb_002110_190--Hb_004567_090 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_000254_090--Hb_054865_150 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000156_010 Hb_000156_010 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290 Hb_168978_030 Hb_168978_030 Hb_000640_170--Hb_168978_030 Hb_000035_470 Hb_000035_470 Hb_000640_170--Hb_000035_470 Hb_001599_040 Hb_001599_040 Hb_000640_170--Hb_001599_040 Hb_009898_050 Hb_009898_050 Hb_000640_170--Hb_009898_050 Hb_000640_170--Hb_000156_010 Hb_002044_150--Hb_007479_040 Hb_004254_090 Hb_004254_090 Hb_002044_150--Hb_004254_090 Hb_002044_150--Hb_168978_030 Hb_000207_050 Hb_000207_050 Hb_002044_150--Hb_000207_050 Hb_000138_100 Hb_000138_100 Hb_002044_150--Hb_000138_100 Hb_000028_480 Hb_000028_480 Hb_007479_040--Hb_000028_480 Hb_007479_040--Hb_004567_090 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_007479_040--Hb_004254_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.30934 4.82638 7.02357 11.4291 9.09982 10.0165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4166 9.08199 10.3626 10.6579 8.70601

CAGE analysis