Hb_026198_080

Information

Type transcription factor
Description TF Family: NAC
Location Contig26198: 127407-129580
Sequence    

Annotation

kegg
ID rcu:RCOM_0685960
description NAC domain-containing protein, putative
nr
ID XP_011038131.1
description PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
swissprot
ID Q9C8W9
description NAC domain-containing protein 30 OS=Arabidopsis thaliana GN=NAC030 PE=1 SV=1
trembl
ID E5KUI2
description Transcription factor OS=Populus trichocarpa GN=WND6B PE=2 SV=1
Gene Ontology
ID GO:0006355
description nac domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27400: 128744-128976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026198_080 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
2 Hb_009158_040 0.0454997001 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
3 Hb_008705_080 0.0570965792 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
4 Hb_002170_030 0.0581541364 - - PREDICTED: laccase-4-like [Jatropha curcas]
5 Hb_001053_120 0.0582893371 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
6 Hb_023342_010 0.0643376246 - - -
7 Hb_002311_010 0.068355123 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
8 Hb_006351_090 0.070851972 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
9 Hb_000416_020 0.0771649761 - - conserved hypothetical protein [Ricinus communis]
10 Hb_038927_020 0.0794137635 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
11 Hb_008518_060 0.080380695 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
12 Hb_007281_010 0.0807077918 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_000805_060 0.0847977503 - - laccase, putative [Ricinus communis]
14 Hb_000462_040 0.0849691433 - - ATSMC2, putative [Ricinus communis]
15 Hb_001014_180 0.0855371071 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
16 Hb_001163_010 0.0857726738 - - PREDICTED: syncoilin [Jatropha curcas]
17 Hb_001097_170 0.0870707118 - - PREDICTED: protein NDR1 [Jatropha curcas]
18 Hb_003972_070 0.0873083059 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
19 Hb_000023_100 0.0913711604 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
20 Hb_000029_210 0.0927393985 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_026198_080 Hb_026198_080 Hb_009158_040 Hb_009158_040 Hb_026198_080--Hb_009158_040 Hb_008705_080 Hb_008705_080 Hb_026198_080--Hb_008705_080 Hb_002170_030 Hb_002170_030 Hb_026198_080--Hb_002170_030 Hb_001053_120 Hb_001053_120 Hb_026198_080--Hb_001053_120 Hb_023342_010 Hb_023342_010 Hb_026198_080--Hb_023342_010 Hb_002311_010 Hb_002311_010 Hb_026198_080--Hb_002311_010 Hb_009158_040--Hb_001053_120 Hb_009158_040--Hb_002170_030 Hb_009158_040--Hb_023342_010 Hb_006351_090 Hb_006351_090 Hb_009158_040--Hb_006351_090 Hb_001163_010 Hb_001163_010 Hb_009158_040--Hb_001163_010 Hb_008705_080--Hb_002170_030 Hb_000805_060 Hb_000805_060 Hb_008705_080--Hb_000805_060 Hb_008705_080--Hb_001053_120 Hb_008705_080--Hb_009158_040 Hb_008705_080--Hb_006351_090 Hb_002170_030--Hb_023342_010 Hb_002170_030--Hb_006351_090 Hb_002170_030--Hb_001053_120 Hb_001053_120--Hb_001163_010 Hb_001053_120--Hb_023342_010 Hb_000029_210 Hb_000029_210 Hb_001053_120--Hb_000029_210 Hb_000023_100 Hb_000023_100 Hb_023342_010--Hb_000023_100 Hb_023342_010--Hb_000029_210 Hb_038927_020 Hb_038927_020 Hb_002311_010--Hb_038927_020 Hb_001935_060 Hb_001935_060 Hb_002311_010--Hb_001935_060 Hb_007281_010 Hb_007281_010 Hb_002311_010--Hb_007281_010 Hb_001377_220 Hb_001377_220 Hb_002311_010--Hb_001377_220 Hb_000416_020 Hb_000416_020 Hb_002311_010--Hb_000416_020 Hb_010166_010 Hb_010166_010 Hb_002311_010--Hb_010166_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0265144 0.079129 0.722153 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.865828

CAGE analysis